Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_27720	PS417_27725	PS417_27730	PS417_27735	PS417_27740
stress	Paraquat dichloride 0.008 mg/ml	-0.1	N.D.	-0.2	-0.0	-2.3
stress	Paraquat dichloride 0.002 mg/ml	+0.0	N.D.	-0.0	-0.1	-1.4
stress	methylglyoxal 0.032 vol%	-0.1	N.D.	-0.2	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	N.D.	-0.2	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	N.D.	-0.1	-0.5	-0.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.2	N.D.	-0.1	-0.2	-0.2
agar plate interaction control	Taped volatile agar plate with no fungus	+0.0	N.D.	-0.0	-0.6	-0.1
phage	P. simiae OR Antrim MOI 0.1	-0.2	N.D.	+0.2	-0.5	-0.1
stress	LB_noSalt with Chloride 1100 mM	+0.1	N.D.	-0.1	-0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	N.D.	+0.3	-0.3	-0.2
phage	P. simiae Grant Run MOI 0.1	+0.1	N.D.	+0.2	-0.3	-0.3
carbon source	L-Alanine (C)	-0.3	N.D.	-0.1	+0.3	-0.1
carbon source	Fumarate (C)	-0.1	N.D.	+0.0	+0.3	-0.3
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	N.D.	-0.1	+0.4	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	N.D.	+0.2	-0.3	+0.2
carbon source	2-Deoxy-D-Ribose (C)	-0.1	N.D.	+0.4	+0.1	-0.3
soil	soil sample 8; outgrowth in LB	-0.3	N.D.	+0.3	+0.2	-0.1
phage	P. simiae OR1 MOI 0.1	-0.4	N.D.	+0.1	+0.3	+0.3
phage	JP1 MOI 10	-0.1	N.D.	+0.4	-0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	N.D.	-0.0	+0.5	-0.2
phage	P. simiae ORA MOI 0.1	-0.2	N.D.	+0.2	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	N.D.	+0.5	+0.2	-0.1
seeds	Growth on radish seeds for 72 hours	-0.2	N.D.	-0.1	+0.5	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.1	N.D.	+0.1	+0.4	+0.1
phage	Wcs_1	+0.6	N.D.	-0.1	+0.0	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	N.D.	+0.1	-0.1	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	N.D.	+0.1	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	N.D.	-0.2	+0.4	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.1	N.D.	+0.4	-0.1	+0.5
carbon source	L-Valine (C)	+0.1	N.D.	+0.1	+0.5	+0.2