Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27700	PS417_27705	PS417_27710	PS417_27715	PS417_27720
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-6.4	-7.3	-0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-6.4	-6.4	-0.2	-0.1
carbon source	L-Alanine (C)	N.D.	-5.9	-4.3	-0.7	-0.3
carbon source	L-Alanine (C)	N.D.	-6.0	-4.2	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-6.0	-3.7	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-6.4	-2.1	-0.8	-0.0
carbon source	D-Alanine (C)	N.D.	-6.2	-2.8	-0.1	+0.0
carbon source	D-Alanine (C)	N.D.	-5.9	-3.1	+0.4	+0.0
carbon source	L-Tryptophan (C)	N.D.	-4.2	-2.9	-0.3	-0.1
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-5.8	-0.3	-0.4	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-4.5	-0.4	-0.0	+0.1
nitrogen source	Uridine (N)	N.D.	-4.2	-0.7	+0.4	+0.1
carbon source	Putrescine (C)	N.D.	-1.9	-1.4	-0.1	-0.1
nitrogen source	Cytidine (N)	N.D.	-3.2	-0.1	-0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.2	+0.5	-2.2	+0.1
root	root sample 6; outgrowth in LB	N.D.	-2.0	-0.3	-0.3	-0.0
carbon source	Putrescine (C)	N.D.	-1.4	-1.4	+0.3	+0.0
phage	P. simiae OR Antrim MOI 0.1	N.D.	-1.1	-0.3	-0.9	-0.2
stress	Phosphomycin 0.003 mg/ml	N.D.	-1.8	+0.1	+0.4	+0.2
soil	soil sample 5; outgrowth in LB	N.D.	-1.8	+0.0	+0.7	+0.1
phage	JP1 MOI 0.1	N.D.	+1.2	+0.1	-1.4	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-1.3	+0.0	+1.4	-0.0
phage	Wcs_0.1	N.D.	+1.3	+0.3	-1.4	+0.1
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	+0.9	+0.9	-1.1	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	+0.5	+1.7	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+1.5	-0.4	+0.6	+0.1
seeds	Growth on radish seeds for 72 hours	N.D.	+0.0	+0.8	+1.8	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	N.D.	+0.9	+0.4	+1.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+1.0	+0.9	+0.8	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+2.4	+0.8	-0.0	-0.1