Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_27670	PS417_27675	PS417_27680	PS417_27685	PS417_27690
carbon source	L-Valine (C)	N.D.	-0.5	-0.1	N.D.	-3.4
soil	soil sample 3; outgrowth in LB	N.D.	-2.6	-0.0	N.D.	-0.4
nitrogen source	Glycine (N)	N.D.	-0.2	-0.3	N.D.	-2.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.6	-0.1	N.D.	-1.4
soil	soil sample 5; outgrowth in LB	N.D.	-0.9	-0.4	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.6	+0.5	N.D.	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.5	+0.6	N.D.	-1.2
phage	P. simiae Grant Run MOI 10	N.D.	-1.1	-0.0	N.D.	-0.8
root	root sample 6; outgrowth in LB	N.D.	-0.2	+0.4	N.D.	-1.9
carbon source	L-Valine (C)	N.D.	-0.1	+0.0	N.D.	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.0	N.D.	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.2	+0.3	N.D.	-0.4
stress	methylglyoxal 0.032 vol%	N.D.	-1.8	+0.5	N.D.	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.6	-0.4	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.3	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	+0.3	N.D.	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-0.5	N.D.	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-1.2	+0.5	N.D.	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.7	+0.8	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.8	+0.3	N.D.	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.6	+0.4	N.D.	+0.7
carbon source	2-Deoxy-D-Ribose 10 mM (C)	N.D.	+1.0	+0.4	N.D.	-0.7
soil	soil sample 8; outgrowth in LB	N.D.	+0.8	+0.6	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.4	-0.0	N.D.	+1.7
stress	Paraquat dichloride 0.002 mg/ml	N.D.	-0.3	+0.1	N.D.	+1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.9	+0.3	N.D.	+0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	+0.3	+0.2	N.D.	+1.2
carbon source	Putrescine (C)	N.D.	+0.2	+0.1	N.D.	+1.6
carbon source	Putrescine (C)	N.D.	+0.2	+0.3	N.D.	+1.4
stress	Paraquat dichloride 0.008 mg/ml	N.D.	-0.1	+0.3	N.D.	+2.9