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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Number of genes on each side:
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF5405 and GFF5406 are separated by 201 nucleotides
GFF5406 and GFF5407 overlap by 8 nucleotides
GFF5407 and GFF5408 are separated by 369 nucleotides
GFF5408 and GFF5409 are separated by 1014 nucleotides
GFF5405 - hypothetical protein, at 5,381,153 to 5,381,740
GFF5405
GFF5406 - hypothetical protein, at 5,381,942 to 5,382,343
GFF5406
GFF5407 - hypothetical protein, at 5,382,336 to 5,382,656
GFF5407
GFF5408 - Transposase for insertion sequences IS1326/IS1353, at 5,383,026 to 5,383,409
GFF5408
GFF5409 - hypothetical protein, at 5,384,424 to 5,384,537
GFF5409
Group
Condition
GFF5405
GFF5406
GFF5407
GFF5408
GFF5409
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.2
-0.8
+0.3
-1.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.4
+0.0
-0.4
-1.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.3
-0.4
-0.0
-1.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.4
-0.9
-0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.4
-0.3
-0.4
-0.3
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.3
-0.2
-0.7
-0.0
-0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.4
-0.4
-0.5
+0.1
-0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.0
-0.2
-0.4
-0.9
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.4
-0.3
+0.1
-0.8
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.3
-0.6
-0.2
-0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.2
-0.4
-0.3
-0.2
-0.4
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.3
-0.4
+0.1
-0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.2
-0.3
+0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.2
-0.1
+0.0
-0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.3
-0.6
-0.1
+0.7
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.2
-0.2
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.3
-0.2
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.2
+0.1
+0.0
-0.1
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