Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27665 and PS417_27670 are separated by 255 nucleotidesPS417_27670 and PS417_27675 are separated by 58 nucleotidesPS417_27675 and PS417_27680 are separated by 134 nucleotidesPS417_27680 and PS417_27685 are separated by 133 nucleotides PS417_27665: PS417_27665 - diguanylate cyclase, at 5,966,268 to 5,967,932 _27665 PS417_27670: PS417_27670 - ATP-dependent DNA helicase Rep, at 5,968,188 to 5,970,197 _27670 PS417_27675: PS417_27675 - xanthine phosphoribosyltransferase, at 5,970,256 to 5,970,828 _27675 PS417_27680: PS417_27680 - acetyl-CoA hydrolase, at 5,970,963 to 5,972,885 _27680 PS417_27685: PS417_27685 - cytochrome C, at 5,973,019 to 5,973,444 _27685
Group Condition PS417_27665 PS417_27670 PS417_27675 PS417_27680 PS417_27685
soil soil sample 3; outgrowth in LB -0.3 N.D. -2.6 -0.0 N.D.
stress methylglyoxal 0.032 vol% -0.9 N.D. -1.8 +0.5 N.D.
motility inner cut, LB soft agar motility assay -1.1 N.D. -0.6 -0.2 N.D.
phage JP1 MOI 10 -1.3 N.D. -0.1 -0.3 N.D.
phage P. simiae Grant Run MOI 0.1 -0.6 N.D. -0.7 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 N.D. -1.2 +0.3 N.D.
nitrogen source Uridine (N) -1.4 N.D. +0.1 +0.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.7 N.D. -0.9 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -1.5 +0.6 N.D.
phage JP1 MOI 0.1 -1.2 N.D. -0.0 +0.5 N.D.
soil soil sample 2; outgrowth in LB +0.5 N.D. -1.2 -0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 N.D. -1.2 +0.5 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 N.D. +0.6 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 N.D. -0.7 +0.8 N.D.
soil soil sample 5; outgrowth in LB +0.9 N.D. -0.9 -0.4 N.D.
supernatant control Vogels_fungal_media 0.1X -1.2 N.D. +0.5 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 N.D. +0.9 +0.3 N.D.
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM +1.1 N.D. -0.9 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. +0.8 +0.3 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +1.0 N.D. -0.2 +0.5 N.D.
stress 6-methoxy-2(3H)-benzoxazolone 0.5 mM +1.2 N.D. +0.2 -0.2 N.D.
root root sample 6; outgrowth in LB +1.4 N.D. -0.2 +0.4 N.D.
soil soil sample 8; outgrowth in LB +0.4 N.D. +0.8 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.0 N.D. +0.6 +0.2 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.4 N.D. +1.0 +0.4 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB +1.6 N.D. +0.2 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.9 N.D. -0.1 +0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +2.3 N.D. +0.0 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.2 N.D. -0.0 +0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.4 N.D. +0.6 -0.4 N.D.
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