Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27650 and PS417_27655 are separated by 177 nucleotidesPS417_27655 and PS417_27660 are separated by 149 nucleotidesPS417_27660 and PS417_27665 are separated by 66 nucleotidesPS417_27665 and PS417_27670 are separated by 255 nucleotides PS417_27650: PS417_27650 - chemotaxis protein, at 5,961,574 to 5,963,550 _27650 PS417_27655: PS417_27655 - LysR family transcriptional regulator, at 5,963,728 to 5,964,648 _27655 PS417_27660: PS417_27660 - multidrug transporter, at 5,964,798 to 5,966,201 _27660 PS417_27665: PS417_27665 - diguanylate cyclase, at 5,966,268 to 5,967,932 _27665 PS417_27670: PS417_27670 - ATP-dependent DNA helicase Rep, at 5,968,188 to 5,970,197 _27670
Group Condition PS417_27650 PS417_27655 PS417_27660 PS417_27665 PS417_27670
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.4 -1.3 -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.1 +0.2 -1.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.5 +0.1 -0.4 -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.6 +0.8 -0.1 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +0.6 +0.1 -1.2 N.D.
stress methylglyoxal 0.032 vol% -0.4 +0.4 -0.4 -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +1.2 +0.1 -1.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 +0.6 -0.0 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 +1.3 +0.3 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.7 -0.2 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.8 -0.4 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.7 +0.1 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.6 +0.1 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 +0.9 -0.0 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +1.2 -0.1 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.9 +0.0 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 +1.3 -0.3 -0.0 N.D.
carbon source L-Valine (C) +0.1 -0.3 -0.7 +1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.6 +0.3 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.6 +0.3 +0.5 N.D.
rhizosphere rhizosphere sample 1; outgrowth in LB -0.3 -0.3 +0.6 +0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.6 +0.2 +1.3 N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 -0.1 -0.1 +1.6 N.D.
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.7 -0.2 +0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.1 +0.2 +1.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 +0.4 +0.2 +1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.2 -0.1 +2.3 N.D.
root root sample 6; outgrowth in LB +0.1 +0.6 +0.5 +1.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 +0.0 +0.0 +3.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.0 +0.1 +3.2 N.D.
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