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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF538 and GFF539 are separated by 15 nucleotides
GFF539 and GFF540 are separated by 80 nucleotides
GFF540 and GFF541 are separated by 24 nucleotides
GFF541 and GFF542 are separated by 28 nucleotides
GFF538 - FIG00454528: hypothetical protein, at 578,242 to 579,054
GFF538
GFF539 - no description, at 579,070 to 579,369
GFF539
GFF540 - Permease of the drug/metabolite transporter (DMT) superfamily, at 579,450 to 580,352
GFF540
GFF541 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 580,377 to 581,102
GFF541
GFF542 - no description, at 581,131 to 581,757
GFF542
Group
Condition
GFF538
GFF539
GFF540
GFF541
GFF542
complex community
Community=arabino-guar; Passage=4
-0.1
-0.3
-0.0
-0.0
-0.6
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.2
-0.0
+0.2
-1.2
phage
phage_bap4
+0.0
-0.1
-0.1
-0.2
-0.6
complex community
Community=guar; Passage=4
+0.2
-0.2
-0.2
-0.3
-0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-0.2
+0.0
-0.2
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.2
+0.0
+0.1
-0.6
complex community
Community=guar; Passage=4
-0.2
-0.1
+0.0
-0.1
-0.2
phage
phage_bap4
-0.1
+0.0
+0.0
-0.1
-0.4
phage
phage_bap4
-0.0
-0.1
-0.1
-0.1
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.0
+0.0
-0.1
-0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
+0.1
+0.1
-0.4
complex community
Community=guar; Passage=4
+0.1
+0.2
-0.1
-0.4
-0.3
phage
phage_bap4
+0.0
-0.1
-0.0
-0.0
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.0
+0.0
-0.0
-0.3
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.1
-0.0
+0.0
-0.4
complex community
Community=arabino-guar; Passage=4
+0.3
-0.3
-0.2
+0.2
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.0
+0.0
-0.0
-0.1
-0.2
no phage control
no phage control
+0.0
+0.0
+0.1
-0.2
-0.2
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.3
+0.3
-0.2
-0.1
complex community
Community=Kojac gum; Passage=4
-0.1
+0.1
-0.0
+0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.1
+0.1
-0.2
+0.0
complex community
Community=arabino-guar; Passage=4
-0.0
-0.6
+0.1
+0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.1
+0.1
-0.0
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.1
+0.1
+0.2
-0.3
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.1
-0.1
-0.0
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
-0.0
+0.1
-0.1
+0.2
complex community
Community=arabino-guar; Passage=4
+0.0
-0.1
-0.2
+0.1
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.1
+0.1
+0.0
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.0
+0.1
+0.0
+0.3
complex community
Community=guar; Passage=4
+0.2
+0.1
+0.1
-0.2
+0.3
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