Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27630 and PS417_27635 are separated by 94 nucleotidesPS417_27635 and PS417_27640 overlap by 4 nucleotidesPS417_27640 and PS417_27645 are separated by 111 nucleotidesPS417_27645 and PS417_27650 are separated by 3 nucleotides PS417_27630: PS417_27630 - MFS transporter, at 5,957,101 to 5,958,372 _27630 PS417_27635: PS417_27635 - magnesium chelatase, at 5,958,467 to 5,959,963 _27635 PS417_27640: PS417_27640 - TetR family transcriptional regulator, at 5,959,960 to 5,960,544 _27640 PS417_27645: PS417_27645 - membrane protein, at 5,960,656 to 5,961,570 _27645 PS417_27650: PS417_27650 - chemotaxis protein, at 5,961,574 to 5,963,550 _27650
Group Condition PS417_27630 PS417_27635 PS417_27640 PS417_27645 PS417_27650
rhizosphere rhizosphere sample 8; outgrowth in LB -0.1 +0.2 -5.1 -0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.1 -3.6 -0.4 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -0.3 -3.1 -0.5 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 -0.3 -3.7 +0.2 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -0.8 -2.2 +0.3 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.1 -2.0 -0.2 -1.1
soil soil sample 5; outgrowth in LB -0.0 -0.2 -3.0 -0.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.6 -1.0 -0.2 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.3 -2.6 +0.2 -0.6
soil soil sample 4; outgrowth in LB -0.1 +0.3 -3.7 +0.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.9 -1.6 -0.3 -0.6
stress Gentamicin 0.008 mg/ml -0.2 -0.1 -1.9 -0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.0 -0.4 -0.6 -2.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -0.1 -2.5 -0.2 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.3 -2.2 +0.0 -0.2
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.1 -0.0 -2.9 +0.2 +0.1
carbon source Carbon source L-Citrulline 5 mM -0.1 -0.5 -2.0 +0.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 -0.3 -2.3 +0.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.0 -1.5 -0.4 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 -0.6 -2.0 +0.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.3 -1.4 +0.5 -1.1
stress 6-methoxy-2(3H)-benzoxazolone 2.5 mM -0.2 +0.2 -2.3 +0.1 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.2 +0.5 -2.6 +0.2 -0.2
solid stress Fraxetin 3 mM; solid stress +0.1 -0.3 -2.2 +0.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -0.1 -1.8 +0.4 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 +0.5 -2.1 +0.3 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.5 -0.8 -0.1 -1.1
soil soil sample 6; outgrowth in LB +0.2 +0.5 -1.4 -0.3 -0.1
phage JP1 MOI 10 -0.1 +0.7 +1.0 -0.8 -0.1
carbon source L-Valine (C) -0.3 +0.8 +0.7 +0.3 -0.4
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