Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5390 and GFF5391 are separated by 45 nucleotidesGFF5391 and GFF5392 overlap by 20 nucleotidesGFF5392 and GFF5393 are separated by 1 nucleotidesGFF5393 and GFF5394 are separated by 5 nucleotides GFF5390 - RecA protein, at 16,579 to 17,685 GFF5390 GFF5391 - Regulatory protein RecX, at 17,731 to 18,192 GFF5391 GFF5392 - no description, at 18,173 to 18,604 GFF5392 GFF5393 - mandelate racemase/muconate lactonizing enzyme family protein, at 18,606 to 19,715 GFF5393 GFF5394 - ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines), at 19,721 to 20,548 GFF5394
Group Condition GFF5390 GFF5391 GFF5392 GFF5393 GFF5394
complex community Community=Kojac gum; Passage=4 -2.4 N.D. -0.2 -0.0 -0.4
complex community Community=guar; Passage=4 -0.9 N.D. -0.1 +0.1 -0.9
complex community Community=guar; Passage=4 -1.6 N.D. +0.3 -0.1 +0.2
complex community Community=arabino-guar; Passage=4 -1.9 N.D. -0.1 +0.2 +0.8
complex community Community=Locust bean gum; Passage=4 -0.5 N.D. -0.1 +0.1 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.4 N.D. +0.1 +0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 N.D. +0.0 +0.0 -0.4
complex community Community=guar; Passage=4 -1.1 N.D. +0.0 +0.1 +0.2
phage phage_bap4 -0.6 N.D. -0.0 -0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.3 N.D. -0.1 +0.0 -0.3
phage phage_bap4 -0.4 N.D. -0.1 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.0 N.D. -0.1 -0.2 -0.4
complex community Community=Locust bean gum; Passage=4 -1.0 N.D. -0.1 +0.2 +0.4
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 N.D. +0.0 +0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.3 N.D. +0.1 +0.0 -0.3
phage phage_bap4 -0.5 N.D. -0.0 -0.0 +0.2
complex community Community=arabino-guar; Passage=4 -1.3 N.D. +0.1 +0.2 +0.7
vitamin M9 with Supernatant from Cyptococcus -0.4 N.D. +0.1 +0.1 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.4 N.D. -0.1 +0.1 +0.2
complex community Community=arabino-guar; Passage=4 -0.7 N.D. +0.1 +0.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 N.D. +0.1 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.2 N.D. +0.2 +0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.1 N.D. +0.2 +0.0 -0.4
complex community Community=arabino-guar; Passage=4 -0.8 N.D. +0.3 +0.2 +0.4
phage phage_bap4 -0.3 N.D. +0.0 -0.0 +0.3
no phage control no phage control -0.3 N.D. +0.1 +0.0 +0.2
phage phage_bap4 +0.2 N.D. -0.2 -0.0 +0.2
complex community Community=Kojac gum; Passage=1 +0.4 N.D. +0.0 -0.0 +0.2
complex community Community=Locust bean gum; Passage=4 +0.1 N.D. -0.0 +0.0 +0.6
complex community Community=guar; Passage=4 +0.1 N.D. +0.2 +0.2 +0.5
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