Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02735	PS417_02740	PS417_02745	PS417_02750	PS417_02755
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+0.0	-2.3	+0.2	-0.7
phage	JP1 MOI 10	+0.0	-2.7	-0.8	+0.1	+0.4
soil	soil sample 3; outgrowth in LB	-0.3	-1.8	-0.7	-0.0	+0.1
motility	inner cut, LB soft agar motility assay	-0.5	-2.1	-0.1	+0.0	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-1.9	-0.3	+0.1	-0.4
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.4	-1.2	-0.6	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.3	-1.4	-0.3	+0.1
phage	JP1 MOI 1	+0.2	-1.1	-0.6	+0.4	-0.2
solid stress	Fraxetin 3 mM; solid stress	+0.0	-0.9	-0.8	+0.5	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.1	-1.5	+0.8	-0.2	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.2	-0.9	+0.4	-0.3
phage	JP1 MOI 10	-0.3	-1.3	+1.2	-0.0	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-1.0	+0.5	+0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-1.8	+0.5	+0.4	-0.0
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.0	+1.2	-0.7	-0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-1.3	+0.7	+0.8	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-1.2	+0.6	+0.8	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.3	-0.7	+0.7	+0.3	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.7	-0.8	+0.5	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	+1.2	-0.6	+0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	+1.4	-0.9	+0.1	+0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	+0.7	+0.9	+0.2	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	+1.0	+0.8	+0.1	-0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.1	+1.3	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.3	+0.3	+1.0	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+2.0	+0.0	+0.0	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-0.1	+1.2	+0.5	+0.4
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.3	+1.6	+0.3	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	+0.8	+1.1	+0.6	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.8	+0.5	+0.4	-0.1	+0.5