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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF537 and GFF538 are separated by 48 nucleotides
GFF538 and GFF539 are separated by 15 nucleotides
GFF539 and GFF540 are separated by 80 nucleotides
GFF540 and GFF541 are separated by 24 nucleotides
GFF537 - FIG00453455: hypothetical protein, at 577,201 to 578,193
GFF537
GFF538 - FIG00454528: hypothetical protein, at 578,242 to 579,054
GFF538
GFF539 - no description, at 579,070 to 579,369
GFF539
GFF540 - Permease of the drug/metabolite transporter (DMT) superfamily, at 579,450 to 580,352
GFF540
GFF541 - Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase, at 580,377 to 581,102
GFF541
Group
Condition
GFF537
GFF538
GFF539
GFF540
GFF541
complex community
Community=arabino-guar; Passage=4
-0.6
-0.1
-0.3
-0.0
-0.0
phage
phage_bap4
-0.2
-0.0
-0.1
-0.1
-0.1
complex community
Community=guar; Passage=4
+0.0
+0.2
-0.2
-0.2
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.0
-0.2
+0.0
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.1
-0.3
+0.3
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.4
+0.1
-0.2
-0.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
-0.0
-0.0
+0.0
-0.3
phage
phage_bap4
-0.2
+0.0
-0.1
-0.0
-0.0
complex community
Community=guar; Passage=4
-0.1
+0.1
+0.2
-0.1
-0.4
phage
phage_bap4
+0.1
+0.0
-0.1
-0.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.1
-0.0
+0.1
+0.0
complex community
Community=guar; Passage=4
+0.2
-0.2
-0.1
+0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.2
+0.1
+0.1
-0.2
complex community
Community=arabino-guar; Passage=4
-0.2
+0.3
-0.3
-0.2
+0.2
complex community
Community=Locust bean gum; Passage=1
+0.1
-0.0
-0.2
-0.1
+0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
-0.1
+0.1
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
-0.0
+0.0
-0.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.1
-0.0
-0.6
+0.1
+0.4
complex community
Community=arabino-guar; Passage=4
-0.0
+0.0
-0.1
-0.2
+0.1
complex community
Community=Kojac gum; Passage=1
+0.1
-0.0
-0.1
+0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.1
-0.1
+0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.1
-0.1
-0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.1
-0.2
+0.0
+0.1
no phage control
no phage control
+0.2
+0.0
-0.0
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.1
+0.0
-0.0
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.1
+0.0
+0.0
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.1
+0.0
-0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
+0.1
+0.1
+0.2
complex community
Community=guar; Passage=4
-0.1
+0.2
+0.1
+0.1
-0.2
complex community
Community=Kojac gum; Passage=4
+0.3
-0.1
+0.1
-0.0
+0.2
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