Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27580 and PS417_27585 are separated by 3 nucleotidesPS417_27585 and PS417_27590 are separated by 13 nucleotidesPS417_27590 and PS417_27595 are separated by 2 nucleotidesPS417_27595 and PS417_27600 overlap by 4 nucleotides PS417_27580: PS417_27580 - diaminopimelate decarboxylase, at 5,949,150 to 5,950,397 _27580 PS417_27585: PS417_27585 - diaminopimelate epimerase, at 5,950,401 to 5,951,231 _27585 PS417_27590: PS417_27590 - hypothetical protein, at 5,951,245 to 5,951,961 _27590 PS417_27595: PS417_27595 - recombinase XerC, at 5,951,964 to 5,952,863 _27595 PS417_27600: PS417_27600 - HAD family hydrolase, at 5,952,860 to 5,953,555 _27600
Group Condition PS417_27580 PS417_27585 PS417_27590 PS417_27595 PS417_27600
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.2 -1.1 -6.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -0.9 -3.0 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.5 -0.9 -4.6 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.3 -1.4 -1.3 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.6 -1.4 -1.7 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.7 -0.7 -3.4 +0.4
carbon source Gly-Glu (C) N.D. -2.8 -1.0 -1.1 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.1 -0.3 -1.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.1 -1.7 -1.5 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.6 -1.3 -1.8 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.1 -1.3 -1.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.1 -1.1 -0.7 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.9 -1.3 -2.1 +0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -2.1 -0.5 -1.3 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.8 -0.6 -0.4 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -3.2 +0.2 -0.7 +0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.6 -1.3 -0.7 +0.1
stress Cisplatin 0.01 mg/ml N.D. -2.0 +0.8 -2.3 +0.1
liquid stress Fraxetin 3 mM; liquid stress N.D. -1.7 +0.3 -1.8 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -3.7 +0.3 -1.2 +1.3
soil soil sample 4; outgrowth in LB N.D. -1.6 +0.4 -1.6 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.1 -0.8 -0.4 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.5 -1.1 -0.6 +0.5
soil soil sample 5; outgrowth in LB N.D. -0.7 +0.6 -1.9 -0.4
liquid stress Fraxetin 3 mM; liquid stress N.D. -2.7 -0.0 +1.0 -0.0
liquid stress 80% Methanol 3 mM; liquid stress N.D. -2.6 +1.7 +0.3 +0.1
phage P. simiae OR Antrim MOI 10 N.D. -2.1 +0.3 +1.6 -0.1
carbon source L-Valine (C) N.D. +1.3 +0.5 -2.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -1.8 -0.3 +2.7 -0.2
stress Gentamicin 0.008 mg/ml N.D. +1.5 +1.2 -1.7 +0.1
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