Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27565 and PS417_27570 are separated by 352 nucleotidesPS417_27570 and PS417_27580 are separated by 418 nucleotidesPS417_27580 and PS417_27585 are separated by 3 nucleotidesPS417_27585 and PS417_27590 are separated by 13 nucleotides PS417_27565: PS417_27565 - nucleoside diphosphate kinase regulator, at 5,947,633 to 5,948,046 _27565 PS417_27570: PS417_27570 - frataxin, at 5,948,399 to 5,948,731 _27570 PS417_27580: PS417_27580 - diaminopimelate decarboxylase, at 5,949,150 to 5,950,397 _27580 PS417_27585: PS417_27585 - diaminopimelate epimerase, at 5,950,401 to 5,951,231 _27585 PS417_27590: PS417_27590 - hypothetical protein, at 5,951,245 to 5,951,961 _27590
Group Condition PS417_27565 PS417_27570 PS417_27580 PS417_27585 PS417_27590
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -3.6 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -3.3 -1.4
carbon source Gly-Glu (C) N.D. N.D. N.D. -2.8 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.8 -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.1 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.8 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -3.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -3.7 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.2 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.1 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -3.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.1 -0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.6 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.6 -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.1 -1.7
liquid stress Fraxetin 3 mM; liquid stress N.D. N.D. N.D. -2.7 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -2.7 -0.0
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. -2.3 -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. N.D. N.D. -2.1 -0.5
seeds Growth on radish seeds for 72 hours N.D. N.D. N.D. -1.7 -0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -1.5 -1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. N.D. N.D. -2.2 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. N.D. -1.4 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -2.7 +0.3
motility inner cut, LB soft agar motility assay N.D. N.D. N.D. -2.2 +0.4
liquid stress 80% Methanol 3 mM; liquid stress N.D. N.D. N.D. -2.1 +0.8
stress 1-ethyl-3-methylimidazolium acetate 35 mM N.D. N.D. N.D. -2.0 +0.8
stress Cisplatin 0.01 mg/ml N.D. N.D. N.D. -2.0 +0.8
liquid stress 80% Methanol 3 mM; liquid stress N.D. N.D. N.D. -2.6 +1.7
stress Gentamicin 0.008 mg/ml N.D. N.D. N.D. +1.5 +1.2
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