Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5376 and GFF5377 are separated by 71 nucleotidesGFF5377 and GFF5378 are separated by 1 nucleotidesGFF5378 and GFF5379 are separated by 92 nucleotidesGFF5379 and GFF5380 are separated by 13 nucleotides GFF5376 - hypothetical protein, at 3,177 to 4,010 GFF5376 GFF5377 - Transcriptional regulator, AcrR family, at 4,082 to 4,717 GFF5377 GFF5378 - hypothetical protein, at 4,719 to 4,928 GFF5378 GFF5379 - Putative hydrolase, at 5,021 to 5,893 GFF5379 GFF5380 - BUG/TctC family periplasmic protein, at 5,907 to 6,869 GFF5380
Group Condition GFF5376 GFF5377 GFF5378 GFF5379 GFF5380
complex community Community=arabino-guar; Passage=4 -1.9 +0.2 N.D. +0.3 -0.2
complex community Community=guar; Passage=4 -1.0 -0.1 N.D. +0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.8 +0.0 N.D. -0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.7 +0.0 N.D. +0.0 -0.2
complex community Community=guar; Passage=4 -0.7 +0.2 N.D. -0.1 -0.1
complex community Community=Kojac gum; Passage=1 -0.3 -0.1 N.D. -0.0 -0.0
phage phage_bap4 -0.2 -0.1 N.D. -0.0 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.7 +0.1 N.D. +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.8 +0.0 N.D. +0.1 +0.3
complex community Community=Locust bean gum; Passage=4 -0.4 +0.1 N.D. -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 -0.2 N.D. +0.1 +0.0
phage phage_bap4 -0.3 +0.1 N.D. -0.0 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.4 -0.1 N.D. +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.0 N.D. +0.1 -0.0
phage phage_bap4 -0.3 +0.1 N.D. +0.0 +0.0
complex community Community=Locust bean gum; Passage=4 +0.3 -0.2 N.D. +0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.4 +0.0 N.D. +0.1 +0.1
complex community Community=Locust bean gum; Passage=4 +0.4 -0.3 N.D. +0.1 -0.0
no phage control no phage control +0.3 -0.0 N.D. -0.1 -0.0
phage phage_bap4 +0.3 -0.0 N.D. -0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.1 N.D. +0.1 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 +0.2 N.D. -0.0 +0.2
vitamin M9 with Supernatant from Cyptococcus +0.3 -0.1 N.D. +0.2 -0.1
complex community Community=arabino-guar; Passage=4 +0.4 +0.1 N.D. +0.0 -0.3
phage phage_bap4 +0.4 +0.1 N.D. -0.1 +0.1
no phage control no phage control +0.4 +0.1 N.D. +0.0 +0.1
complex community Community=arabino-guar; Passage=4 +0.3 +0.1 N.D. +0.3 -0.1
complex community Community=guar; Passage=4 +0.5 +0.0 N.D. +0.2 +0.2
complex community Community=Locust bean gum; Passage=4 +0.4 +0.0 N.D. +0.3 +0.2
complex community Community=arabino-guar; Passage=4 +0.5 +0.3 N.D. +0.2 +0.4
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