Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27495	PS417_27500	PS417_27505	PS417_27510	PS417_27515
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.1	-1.6	-0.4	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-1.6	-1.0	-1.3
stress	Gentamicin 0.008 mg/ml	N.D.	-0.4	+0.2	-2.6	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.1	-0.1	-0.6	-1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-0.9	-0.9	-1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.9	-1.0	-1.4	-1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-1.7	-0.7	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	-1.0	-0.3	-1.6
solid stress	Fraxetin 3 mM; solid stress	N.D.	-0.3	-1.1	-0.1	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.6	-0.3	-1.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.1	-0.6	-0.8	-1.1
solid stress	Fraxetin 2 mM; solid stress	N.D.	-0.5	-1.0	+0.3	-1.0
phage	P. simiae OR Antrim MOI 0.1	N.D.	+0.3	+0.0	-0.6	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.2	-0.8	-1.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.3	+0.3	-0.5	-1.7
carbon source	Carbon source L-Citrulline 5 mM	N.D.	+0.6	-0.3	-0.6	-1.0
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.6	-0.3	-1.1	-0.5
soil	soil sample 5; outgrowth in LB	N.D.	-0.3	+0.9	-0.8	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	-1.0	+0.6	-0.8
phage	P. simiae OR1 MOI 0.1	N.D.	-0.1	-0.2	+0.9	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.4	+0.5	-1.2
soil	soil sample 4; outgrowth in LB	N.D.	-0.1	+1.2	-0.8	-0.9
soil	soil sample 3; outgrowth in LB	N.D.	+0.0	+1.1	-1.2	-0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.6	+0.7	-0.7	-0.6
soil	soil sample 6; outgrowth in LB	N.D.	-0.0	+1.3	-0.8	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.5	+1.0	-0.2	-1.1
root	root sample 6; outgrowth in LB	N.D.	-0.4	+2.4	-0.4	-0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+0.1	+1.5	-0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.2	+1.7	-0.7	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	+0.2	+2.2	+0.2	-0.5