Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27485	PS417_27490	PS417_27495	PS417_27500	PS417_27505
liquid stress	Fraxetin 3 mM; liquid stress	-0.2	-1.7	N.D.	-0.3	-0.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.2	-2.4	N.D.	-0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	-0.5	N.D.	-1.1	-0.1
solid stress	Fraxetin 3 mM; solid stress	-0.2	-0.7	N.D.	-0.3	-1.1
phage	P. simiae OR Antrim MOI 0.1	-0.3	-1.4	N.D.	-0.1	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	-0.1	N.D.	-0.3	-1.7
soil	soil sample 7; outgrowth in LB	+0.0	-2.5	N.D.	-0.4	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.7	N.D.	-0.3	-1.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.8	N.D.	+0.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.6	-0.9	N.D.	-0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.6	N.D.	+0.9	-1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.5	+0.8	N.D.	-0.4	-0.7
phage	JP1 MOI 1	+0.2	-1.0	N.D.	+0.5	-0.5
phage	P. simiae Grant Run MOI 0.1	+0.7	-1.3	N.D.	+0.2	-0.3
phage	P. simiae Grant Run MOI 10	+0.7	-0.8	N.D.	+0.5	-1.0
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-1.3	N.D.	+0.6	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.6	N.D.	+0.5	+0.6
phage	P. simiae Grant Run MOI 10	+0.9	-1.0	N.D.	+0.7	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.5	-1.4	N.D.	+0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.6	-0.1	N.D.	-0.2	+1.7
supernatant control	Vogels_fungal_media 0.1X	+0.5	+1.2	N.D.	+0.2	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	+1.3	N.D.	-0.0	+1.0
stress	methylglyoxal 0.032 vol%	-0.2	+1.9	N.D.	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.9	N.D.	+0.7	+0.1
soil	soil sample 6; outgrowth in LB	+0.3	+0.6	N.D.	-0.0	+1.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.1	+1.1	N.D.	+0.3	+0.9
root	root sample 6; outgrowth in LB	-0.1	+0.6	N.D.	-0.4	+2.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.3	+0.7	N.D.	+0.1	+1.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+1.4	N.D.	+0.5	+1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+1.4	N.D.	+0.2	+2.2