Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27480	PS417_27485	PS417_27490	PS417_27495	PS417_27500
soil	soil sample 7; outgrowth in LB	-0.3	+0.0	-2.5	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.9	-0.5	N.D.	-1.1
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.1	-0.2	-2.4	N.D.	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.1	-0.2	-1.7	N.D.	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.2	-0.8	-0.7	N.D.	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.5	-0.8	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.2	-1.1	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-0.5	-0.6	N.D.	+0.5
liquid stress	Fraxetin 2 mM; liquid stress	-0.2	+0.2	-1.5	N.D.	+0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-0.6	-0.9	N.D.	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.0	-0.7	-0.8	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.5	-1.3	N.D.	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.7	+0.7	-0.0	N.D.	-0.5
phage	P. simiae Grant Run MOI 0.1	+0.0	+0.7	-1.3	N.D.	+0.2
phage	P. simiae OR1 MOI 0.1	-0.3	+0.8	-0.8	N.D.	-0.1
phage	P. simiae Grant Run MOI 10	-0.6	+0.7	-0.8	N.D.	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	+1.5	-1.4	N.D.	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.1	-0.6	-0.1	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	-0.3	+1.3	N.D.	-0.0
phage	P. simiae Grant Run MOI 10	+0.5	+0.9	-1.0	N.D.	+0.7
phage	JP1 MOI 10	-0.4	+0.4	+1.0	N.D.	+0.1
stress	Thallium(I) acetate 0.0625 mg/ml	+1.7	-0.3	-0.2	N.D.	+0.2
supernatant control	Vogels_fungal_media 0.1X	-0.3	+0.5	+1.2	N.D.	+0.2
stress	Paraquat dichloride 0.008 mg/ml	+2.3	-0.7	+0.3	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.5	+0.9	N.D.	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.1	+0.3	+1.4	N.D.	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.5	+0.6	N.D.	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.0	+0.1	+1.4	N.D.	+0.5
stress	Cisplatin 0.01 mg/ml	+0.5	+0.4	+0.7	N.D.	+0.6
stress	methylglyoxal 0.032 vol%	+0.6	-0.2	+1.9	N.D.	+0.2