Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_27460	PS417_27465	PS417_27470	PS417_27475	PS417_27480
phage	P. simiae ORA MOI 0.1	-0.7	-0.1	-0.0	-1.5	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	-0.7	-1.0	+0.1
solid stress	Fraxetin 2 mM; solid stress	-0.3	-0.3	+0.5	-0.6	-0.9
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	+0.5	+0.0	-1.8	-0.0
seeds	Growth on radish seeds for 24 hours	+0.2	+0.0	+0.3	-1.5	-0.2
phage	JP1 MOI 0.1	+0.8	+0.0	-0.1	-1.2	-0.3
carbon source	2'-Deoxyinosine 5 mM (C)	+0.4	+0.2	+0.1	-1.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	+0.1	-0.3	-0.6	-0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.2	+0.1	-0.6	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.3	-0.1	-1.2	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	+0.2	-0.0	-0.8	-0.5
stress	Gentamicin 0.008 mg/ml	-0.4	+0.0	-0.1	-0.8	+0.8
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-1.3	+0.1	+1.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.7	+0.2	+0.2	-0.7	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.3	-0.2	+0.4	-0.5
soil	soil sample 4; outgrowth in LB	+0.5	+0.3	-0.5	+1.2	-0.5
soil	soil sample 3; outgrowth in LB	-0.1	+0.3	-0.5	+1.4	+0.0
stress	Thallium(I) acetate 0.0625 mg/ml	-0.1	+0.0	-0.4	-0.0	+1.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.3	-0.6	+1.6	+0.3
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.3	+0.8	-0.4	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	-0.3	+0.4	+1.4	+0.3
stress	Paraquat dichloride 0.002 mg/ml	+0.0	-0.1	-0.2	+0.8	+1.2
soil	soil sample 5; outgrowth in LB	-0.0	+0.5	-0.5	+2.2	-0.3
soil	soil sample 7; outgrowth in LB	+0.3	+0.1	-0.1	+2.3	-0.3
soil	soil sample 6; outgrowth in LB	+0.1	+0.0	-0.7	+2.8	+0.4
stress	Paraquat dichloride 0.008 mg/ml	-0.2	-0.1	+0.1	+0.7	+2.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.4	+0.3	-0.6	+4.1	+0.1
soil	soil sample 8; outgrowth in LB	+0.6	+0.5	+0.1	+3.0	+0.0
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.1	+0.3	+0.2	+4.2	+0.4
root	root sample 6; outgrowth in LB	+0.4	+0.5	-0.1	+4.9	-0.0