Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5358 and GFF5359 overlap by 4 nucleotidesGFF5359 and GFF5360 overlap by 4 nucleotidesGFF5360 and GFF5361 are separated by 2 nucleotidesGFF5361 and GFF5362 are separated by 65 nucleotides GFF5358 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 234,375 to 234,764 GFF5358 GFF5359 - Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 234,761 to 235,162 GFF5359 GFF5360 - Putative transmembrane protein, at 235,159 to 235,530 GFF5360 GFF5361 - FIG146285: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 235,533 to 235,892 GFF5361 GFF5362 - Twin-arginine translocation protein TatA, at 235,958 to 236,203 GFF5362
Group Condition GFF5358 GFF5359 GFF5360 GFF5361 GFF5362
complex community Community=Kojac gum; Passage=4 N.D. N.D. -0.7 -4.0 N.D.
complex community Community=arabino-guar; Passage=4 N.D. N.D. -0.0 -4.2 N.D.
complex community Community=guar; Passage=4 N.D. N.D. +0.0 -4.0 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. N.D. +0.2 -3.9 N.D.
complex community Community=guar; Passage=4 N.D. N.D. -0.1 -2.0 N.D.
phage phage_bap4 N.D. N.D. +0.1 -1.9 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. N.D. -0.0 -1.6 N.D.
complex community Community=arabino-guar; Passage=4 N.D. N.D. +0.4 -1.7 N.D.
phage phage_bap4 N.D. N.D. +0.0 -1.0 N.D.
phage phage_bap4 N.D. N.D. -0.2 -0.6 N.D.
complex community Community=Locust bean gum; Passage=4 N.D. N.D. -0.2 -0.6 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. N.D. -0.1 +0.5 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. -0.1 +0.5 N.D.
phage phage_bap4 N.D. N.D. -0.1 +0.6 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. +0.0 +0.5 N.D.
no phage control no phage control N.D. N.D. +0.1 +0.5 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. +0.0 +0.7 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. N.D. -0.0 +0.7 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. +0.0 +0.7 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. -0.1 +0.8 N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. N.D. +0.2 +0.5 N.D.
phage phage_bap4 N.D. N.D. -0.0 +0.8 N.D.
complex community Community=Kojac gum; Passage=1 N.D. N.D. +0.1 +0.7 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. -0.1 +0.9 N.D.
phage phage_bap4 N.D. N.D. +0.2 +0.7 N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. N.D. +0.0 +0.8 N.D.
complex community Community=guar; Passage=4 N.D. N.D. -0.3 +1.2 N.D.
complex community Community=guar; Passage=4 N.D. N.D. -0.0 +1.2 N.D.
complex community Community=arabino-guar; Passage=4 N.D. N.D. +0.1 +1.1 N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. N.D. +0.1 +1.2 N.D.
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