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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF534 and GFF535 are separated by 137 nucleotides
GFF535 and GFF536 are separated by 130 nucleotides
GFF536 and GFF537 are separated by 15 nucleotides
GFF537 and GFF538 are separated by 48 nucleotides
GFF534 - Two-component system sensor histidine kinase, at 573,913 to 575,925
GFF534
GFF535 - Transcriptional regulator, AraC family, at 576,063 to 576,902
GFF535
GFF536 - no description, at 577,033 to 577,185
GFF536
GFF537 - FIG00453455: hypothetical protein, at 577,201 to 578,193
GFF537
GFF538 - FIG00454528: hypothetical protein, at 578,242 to 579,054
GFF538
Group
Condition
GFF534
GFF535
GFF536
GFF537
GFF538
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.2
-1.1
-0.2
+0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
+0.1
-1.4
+0.2
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.3
-0.9
-0.4
+0.1
complex community
Community=guar; Passage=4
-0.0
+0.1
-1.0
-0.1
+0.1
complex community
Community=arabino-guar; Passage=4
+0.3
+0.0
-0.4
-0.6
-0.1
phage
phage_bap4
-0.1
-0.0
-0.5
-0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.0
-0.4
+0.0
-0.0
phage
phage_bap4
-0.1
-0.1
-0.1
-0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.0
-0.4
-0.0
-0.0
no phage control
no phage control
-0.1
-0.1
-0.5
+0.2
+0.0
complex community
Community=guar; Passage=4
+0.0
+0.2
-0.7
+0.2
-0.2
phage
phage_bap4
-0.4
-0.0
+0.3
-0.0
-0.2
phage
phage_bap4
-0.3
-0.0
-0.2
+0.1
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.1
-0.3
+0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.1
+0.2
-0.1
-0.1
complex community
Community=guar; Passage=4
-0.0
+0.1
-0.3
+0.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.1
-0.2
+0.1
+0.0
complex community
Community=arabino-guar; Passage=4
+0.1
+0.1
-0.1
-0.2
+0.3
complex community
Community=guar; Passage=4
-0.2
+0.1
+0.1
-0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.1
+0.2
+0.2
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
+0.0
+0.2
+0.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.0
+0.0
+0.4
+0.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.0
+0.0
+0.5
-0.0
-0.0
complex community
Community=arabino-guar; Passage=4
+0.2
+0.1
+0.2
-0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
+0.0
+0.3
+0.1
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.3
+0.1
+0.2
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.1
+0.1
+0.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
+0.1
+0.4
+0.2
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.2
+0.7
+0.1
-0.1
complex community
Community=Kojac gum; Passage=4
+0.1
+0.0
+0.8
+0.3
-0.1
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