Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27415	PS417_27420	PS417_27425	PS417_27430	PS417_27435
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.3	-1.9	-0.4	-5.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.2	-0.1	-1.8	-0.0	-4.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.2	-1.1	+0.1	-4.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.0	-0.9	-0.2	-5.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.1	-1.1	-0.6	-3.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.2	-1.6	-0.4	-3.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.4	-1.2	+0.6	-5.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.2	-1.2	+0.2	-4.3
solid stress	Fraxetin 3 mM; solid stress	-0.4	+0.0	-0.9	+0.0	-3.3
exudates	RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x	-0.2	+0.2	-0.4	+0.0	-4.1
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.0	+0.2	-0.7	-0.2	-3.5
carbon source	Carbon source L-Citrulline 5 mM	-0.0	-0.1	-0.4	+0.2	-3.7
carbon source	L-Citrulline (C)	-0.0	-0.2	-0.1	+0.0	-3.6
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	+0.2	+0.1	-0.5	-0.1	-3.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.0	-1.8	+0.1	-2.4
solid stress	Fraxetin 3 mM; solid stress	-0.1	+0.2	-1.2	+0.1	-2.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.3	-1.3	+0.2	-2.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	-0.8	-0.1	-3.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.1	-0.5	+0.4	-3.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	+0.2	-0.8	+0.2	-3.1
carbon source	L-Isoleucine (C)	+0.0	+0.1	+0.4	+0.3	-4.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	+0.1	-0.9	+0.2	-2.8
nitrogen source	Adenine (N)	-0.3	+0.0	+1.7	+0.2	-3.7
stress	Cisplatin 0.01 mg/ml	+0.1	+0.1	+1.5	-0.1	-3.8
stress	methylglyoxal 0.032 vol%	+0.5	-0.2	+1.2	+0.1	-2.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.1	+1.9	-0.4	-1.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.8	-0.1	+2.1	-0.1	-1.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.9	+0.2	-1.7	+0.3	+1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.5	-1.4	+0.5	+1.3
stress	Neomycin 0.04 mg/ml	+0.1	+0.1	+3.8	-0.1	-1.6