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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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500 nt
GFF5355 and GFF5356 are separated by 7 nucleotides
GFF5356 and GFF5357 are separated by 19 nucleotides
GFF5357 and GFF5358 are separated by 37 nucleotides
GFF5358 and GFF5359 overlap by 4 nucleotides
GFF5355 - no description, at 232,632 to 232,772
GFF5355
GFF5356 - Aldose 1-epimerase, at 232,780 to 233,538
GFF5356
GFF5357 - Imidazole glycerol phosphate synthase cyclase subunit, at 233,558 to 234,337
GFF5357
GFF5358 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 234,375 to 234,764
GFF5358
GFF5359 - Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 234,761 to 235,162
GFF5359
Group
Condition
GFF5355
GFF5356
GFF5357
GFF5358
GFF5359
complex community
Community=Kojac gum; Passage=4
-0.7
+0.0
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.5
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
-0.6
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
-0.6
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.4
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.5
-0.6
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
-0.4
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
-0.5
N.D.
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=1
-0.3
+0.3
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
-0.4
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.3
-0.3
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.5
-0.4
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.4
-0.3
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.4
-0.2
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.5
-0.3
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.4
-0.2
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.5
-0.3
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus
+0.6
-0.4
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.5
-0.1
N.D.
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
-0.2
+0.6
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.8
-0.3
N.D.
N.D.
N.D.
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.7
-0.2
N.D.
N.D.
N.D.
complex community
Community=arabino-guar; Passage=4
+0.4
+0.2
N.D.
N.D.
N.D.
complex community
Community=guar; Passage=4
+0.6
+0.1
N.D.
N.D.
N.D.
complex community
Community=guar; Passage=4
+0.2
+0.5
N.D.
N.D.
N.D.
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.8
+0.1
N.D.
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
+1.0
-0.1
N.D.
N.D.
N.D.
complex community
Community=guar; Passage=4
+0.7
+0.3
N.D.
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.8
+0.2
N.D.
N.D.
N.D.
complex community
Community=Locust bean gum; Passage=4
+0.7
+0.8
N.D.
N.D.
N.D.
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