Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27395	PS417_27400	PS417_27405	PS417_27410	PS417_27415
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	N.D.	-0.2	-0.0	-0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.1	N.D.	-0.1	-0.1	-0.1
phage	Wcs_0.1	-0.5	N.D.	+0.4	-0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	N.D.	+0.6	+0.0	+0.1
stress	methylglyoxal 0.032 vol%	-0.6	N.D.	+0.5	-0.0	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	N.D.	+0.3	+0.3	+0.2
phage	P. simiae OR Antrim MOI 10	+0.9	N.D.	-0.2	-0.2	-0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.5	N.D.	-0.6	+0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	N.D.	-0.3	-0.0	+0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	N.D.	-0.5	+0.2	+0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.9	N.D.	-0.5	+0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	N.D.	-0.2	+0.1	+0.9
phage	JP1 MOI 0.1	+0.8	N.D.	-0.7	+0.1	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.5	N.D.	-0.3	+0.1	+0.5
liquid stress	80% Methanol 3 mM; liquid stress	+0.3	N.D.	-0.3	-0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	N.D.	-0.3	-0.0	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	N.D.	+0.7	+0.2	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	+0.2	N.D.	+0.2	-0.2	+0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.6	N.D.	-0.2	+0.1	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	N.D.	-0.3	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.0	N.D.	+0.1	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	N.D.	+0.2	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.5	N.D.	+0.3	-0.0	+0.6
liquid stress	80% Methanol 2 mM; liquid stress	+0.3	N.D.	+0.5	+0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	N.D.	-0.0	+0.6	+0.4
phage	P. simiae OR Antrim MOI 10	+0.6	N.D.	+0.1	+0.4	+0.4
liquid stress	Fraxetin 2 mM; liquid stress	+0.2	N.D.	+0.3	+0.2	+0.8
nophagecontrol	Only library	+0.3	N.D.	+0.2	+0.3	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.4	N.D.	+0.7	+0.3	+0.4
root	root sample 6; outgrowth in LB	+2.3	N.D.	+0.1	+0.1	+0.1