Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_27315 and PS417_27320 are separated by 69 nucleotidesPS417_27320 and PS417_27325 overlap by 4 nucleotidesPS417_27325 and PS417_27330 overlap by 1 nucleotidesPS417_27330 and PS417_27335 are separated by 52 nucleotides PS417_27315: PS417_27315 - hypothetical protein, at 5,893,413 to 5,893,862 _27315 PS417_27320: PS417_27320 - hemolysin secretion protein D, at 5,893,932 to 5,894,897 _27320 PS417_27325: PS417_27325 - multidrug ABC transporter ATP-binding protein, at 5,894,894 to 5,897,611 _27325 PS417_27330: PS417_27330 - membrane protein, at 5,897,611 to 5,898,726 _27330 PS417_27335: PS417_27335 - flagellar basal body protein FliL, at 5,898,779 to 5,899,186 _27335
Group Condition PS417_27315 PS417_27320 PS417_27325 PS417_27330 PS417_27335
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.6 -0.3 +0.3 -0.1 -1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.5 +0.1 -0.1 +0.3 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.8 +0.0 -0.1 +0.4 -0.8
stress methylglyoxal 0.032 vol% -2.6 -0.3 -0.4 +0.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.4 +0.1 +0.1 -0.4 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.7 +0.1 +0.0 +0.0 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.2 -0.0 -0.0 +0.2 -0.4
phage P. simiae Grant Run MOI 10 -2.9 +0.3 +0.0 -0.3 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.5 +0.1 -0.3 +0.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.5 +0.2 -0.1 +0.3 -0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.7 -0.6 +0.0 +0.2 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.6 +0.1 +0.4 -0.2 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 -0.3 +0.2 +0.6 -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 +0.2 +0.2 +0.2 -1.0
supernatant control Vogels_fungal_media 0.1X -1.9 -0.1 +0.1 +0.3 +0.3
soil soil sample 7; outgrowth in LB -1.0 -0.3 +0.3 +0.2 +0.8
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.1 +0.6 +0.5 -0.2 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -0.1 +0.2 +0.5 -1.3
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.6 -0.5 +0.2 +0.4 +1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +2.0 +0.6 -0.1 -0.5 -1.1
rhizosphere rhizosphere sample 2; outgrowth in LB +1.0 -0.7 +0.1 -0.2 +0.9
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.8 -0.8 +0.0 -0.0 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.6 +0.4 +0.3 -0.2 -0.6
stress 1-ethyl-3-methylimidazolium chloride 200 mM +0.9 -0.1 -0.1 -0.2 +1.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.4 -0.6 +0.1 +0.3 +0.5
phage JP1 MOI 10 +0.7 +0.4 +0.0 -0.3 +1.3
soil soil sample 6; outgrowth in LB +1.2 +0.2 +0.1 +0.4 +0.7
stress Phosphomycin 0.003 mg/ml -0.0 +0.6 +0.3 +0.4 +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +2.4 +0.2 +0.3 +0.2 -0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.3 -0.5 +0.2 +1.5 +0.7
remove
PS417_27315
plot		 remove
PS417_27320
plot		 remove
PS417_27325		 remove
PS417_27330
plot		 remove
PS417_27335
plot