Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27295 and PS417_27300 overlap by 4 nucleotidesPS417_27300 and PS417_27305 are separated by 265 nucleotidesPS417_27305 and PS417_27315 are separated by 353 nucleotidesPS417_27315 and PS417_27320 are separated by 69 nucleotides PS417_27295: PS417_27295 - hypothetical protein, at 5,891,641 to 5,891,850 _27295 PS417_27300: PS417_27300 - cell division protein ZapA, at 5,891,847 to 5,892,164 _27300 PS417_27305: PS417_27305 - 5-formyltetrahydrofolate cyclo-ligase, at 5,892,430 to 5,893,059 _27305 PS417_27315: PS417_27315 - hypothetical protein, at 5,893,413 to 5,893,862 _27315 PS417_27320: PS417_27320 - hemolysin secretion protein D, at 5,893,932 to 5,894,897 _27320
Group Condition PS417_27295 PS417_27300 PS417_27305 PS417_27315 PS417_27320
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.5 -3.8 -3.6 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -4.4 -2.9 -0.3 +0.1
stress methylglyoxal 0.032 vol% -0.9 -4.2 +0.0 -2.6 -0.3
soil soil sample 7; outgrowth in LB +0.4 -4.7 -2.0 -1.0 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -2.0 -2.5 -2.4 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -4.5 -2.1 -0.9 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.5 -3.0 -3.5 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -4.4 -1.7 +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -4.5 -2.0 +0.2 +0.3
liquid stress Scopoletin 3 mM; liquid stress -1.0 -3.7 -0.9 -0.3 -0.1
liquid stress Scopoletin 3 mM; liquid stress -0.7 -4.6 -0.6 -0.1 +0.1
soil soil sample 3; outgrowth in LB -0.4 -4.3 -1.6 +0.4 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -1.8 -3.5 -1.5 +0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -1.7 -4.2 +1.4 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -1.7 -1.6 -2.2 -0.0
liquid stress Scopoletin 3 mM; liquid stress -0.7 -4.2 -0.6 +0.6 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -4.5 -0.7 +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.5 -4.4 -1.5 -0.6 +0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.8 -3.8 +0.8 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB +1.2 -3.6 -1.6 +0.3 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -4.5 -1.7 +2.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.9 -2.5 +1.3 -0.5
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.9 -3.1 +1.3 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 -0.7 -2.2 +1.8 -0.8
root root sample 6; outgrowth in LB +1.6 -3.4 -1.1 +0.3 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -3.8 -0.4 +2.0 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 -1.3 -3.6 +1.6 +0.4
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 +1.9 -2.3 +0.7 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.6 +3.2 -0.2 -0.9 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.6 +3.8 -0.3 -0.4 -0.3
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