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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5322 and GFF5323 overlap by 4 nucleotides
GFF5323 and GFF5324 are separated by 86 nucleotides
GFF5324 and GFF5325 are separated by 34 nucleotides
GFF5325 and GFF5326 overlap by 4 nucleotides
GFF5322 - Type IV pilus biogenesis protein PilP, at 199,124 to 199,663
GFF5322
GFF5323 - Type IV pilus biogenesis protein PilQ, at 199,660 to 201,840
GFF5323
GFF5324 - Shikimate kinase I (EC 2.7.1.71), at 201,927 to 202,412
GFF5324
GFF5325 - 3-dehydroquinate synthase (EC 4.2.3.4), at 202,447 to 203,556
GFF5325
GFF5326 - Deoxyguanosinetriphosphate triphosphohydrolase (EC 3.1.5.1), at 203,553 to 204,683
GFF5326
Group
Condition
GFF5322
GFF5323
GFF5324
GFF5325
GFF5326
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.3
-1.2
-4.2
-2.8
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.8
-0.9
-4.2
-3.3
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.8
-0.9
-4.0
-3.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.1
-1.2
-4.1
-2.7
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.8
-0.8
-4.0
-3.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.5
-0.5
-4.1
-3.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.8
-0.6
-4.2
-2.9
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.9
-0.8
-3.2
-3.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-1.1
-0.7
-3.2
-3.1
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
-0.7
-4.1
-2.7
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.7
-0.8
-3.1
-3.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.3
-1.1
-2.1
-3.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.3
-4.1
-3.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.2
-0.3
-4.1
-3.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.1
-4.0
-3.2
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.1
-1.1
-2.4
-3.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.0
-4.1
-3.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.5
-0.7
-2.9
-3.2
+0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.2
-4.0
-2.7
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-1.0
-1.0
-2.5
-2.4
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.4
-2.9
-3.2
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.6
-0.6
-2.2
-3.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.3
-0.3
-3.8
-2.4
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.2
-0.4
-2.9
-3.2
+0.1
phage
phage_bap4
+1.8
+1.7
-2.3
-2.1
-0.1
phage
phage_bap4
+1.6
+1.6
-1.9
-1.9
+0.2
phage
phage_bap4
+4.4
+4.4
-1.3
-0.8
-0.3
phage
phage_bap4
+4.3
+4.3
-0.5
-0.9
-0.1
phage
phage_bap4
+4.4
+4.3
-0.4
-0.3
-0.3
phage
phage_bap4
+4.3
+4.3
-0.3
-0.2
-0.4
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