Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF5312 and GFF5313 are separated by 116 nucleotidesGFF5313 and GFF5314 are separated by 28 nucleotidesGFF5314 and GFF5315 are separated by 18 nucleotidesGFF5315 and GFF5316 overlap by 4 nucleotides GFF5312 - Cytochrome c-type biogenesis protein CcsA/ResC, at 189,009 to 190,325 GFF5312 GFF5313 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 190,442 to 191,467 GFF5313 GFF5314 - Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ, at 191,496 to 192,155 GFF5314 GFF5315 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 192,174 to 193,463 GFF5315 GFF5316 - Diaminopimelate decarboxylase and/or diaminopimelate epimerase leader peptide, at 193,460 to 193,687 GFF5316
Group Condition GFF5312 GFF5313 GFF5314 GFF5315 GFF5316
phage phage_bap4 N.D. -0.1 -0.2 N.D. N.D.
complex community Community=Locust bean gum; Passage=4 N.D. +0.1 -0.3 N.D. N.D.
complex community Community=guar; Passage=4 N.D. +0.0 -0.2 N.D. N.D.
phage phage_bap4 N.D. -0.2 +0.0 N.D. N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. -0.2 +0.1 N.D. N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. -0.1 +0.1 N.D. N.D.
no phage control no phage control N.D. +0.1 -0.1 N.D. N.D.
no phage control no phage control N.D. +0.2 -0.1 N.D. N.D.
complex community Community=Locust bean gum; Passage=4 N.D. +0.2 -0.0 N.D. N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. -0.1 +0.2 N.D. N.D.
phage phage_bap4 N.D. +0.1 +0.1 N.D. N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.1 +0.1 N.D. N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.0 +0.2 N.D. N.D.
complex community Community=arabino-guar; Passage=4 N.D. +0.2 -0.0 N.D. N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.1 +0.1 N.D. N.D.
no phage control no phage control N.D. +0.1 +0.1 N.D. N.D.
complex community Community=Kojac gum; Passage=4 N.D. +0.1 +0.1 N.D. N.D.
vitamin M9 with calcium pantothenate 10 mg/mL N.D. +0.1 +0.1 N.D. N.D.
complex community Community=guar; Passage=4 N.D. +0.2 +0.1 N.D. N.D.
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.1 +0.2 N.D. N.D.
phage phage_bap4 N.D. +0.2 +0.0 N.D. N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. +0.1 +0.2 N.D. N.D.
complex community Community=Locust bean gum; Passage=4 N.D. +0.0 +0.2 N.D. N.D.
vitamin M9 with Supernatant from Cyptococcus N.D. +0.1 +0.1 N.D. N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL N.D. +0.0 +0.3 N.D. N.D.
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.0 +0.3 N.D. N.D.
complex community Community=guar; Passage=4 N.D. +0.1 +0.3 N.D. N.D.
complex community Community=arabino-guar; Passage=4 N.D. +0.1 +0.3 N.D. N.D.
complex community Community=arabino-guar; Passage=4 N.D. +0.2 +0.3 N.D. N.D.
complex community Community=arabino-guar; Passage=4 N.D. +0.3 +0.3 N.D. N.D.
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