Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27185	PS417_27190	PS417_27195	PS417_27200	PS417_27205
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	+0.2	-3.7	-0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.4	-0.0	-3.8	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.0	-3.8	-0.4	-0.7
carbon source	octanoate (C)	-0.6	-0.3	-4.0	-0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	-3.8	-0.5	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	+0.2	-3.7	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.3	-3.7	-0.7	-0.8
carbon source	Gly-Glu (C)	-0.5	+0.2	-4.1	-0.0	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.2	-3.7	+0.2	-1.2
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	-0.3	+0.2	-3.7	-0.5	-0.8
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.2	+0.1	-3.8	-0.5	-0.7
carbon source	NAG (C)	+0.1	-0.1	-4.1	-0.1	-0.8
supernatant	RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	+0.1	-3.9	-0.5	-0.3
carbon source	Cytidine (C)	-0.1	+0.2	-4.2	-0.3	-0.4
carbon source	Putrescine (C)	+0.2	+0.2	-4.0	-0.1	-0.8
solid stress	Fraxetin 3 mM; solid stress	-1.0	+0.0	-3.8	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.7	-3.7	-0.1	+0.3
carbon source	Cytidine (C)	+0.0	+0.2	-4.2	+0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.4	-3.7	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	+0.5	-3.7	-0.1	-0.2
carbon source	L-Valine (C)	+0.6	+0.4	-4.0	-0.6	-0.6
carbon source	L-Glutamine (C)	-0.0	+0.3	-4.4	-0.3	+0.2
solid stress	80% Methanol 0.5 mM; solid stress	-0.6	-0.2	-3.8	+0.1	+0.5
carbon source	L-Valine (C)	+0.5	-0.4	-3.8	-0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.3	-3.7	-0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.3	-3.8	+0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.3	-3.8	+0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.8	+0.4	-3.7	+0.1	+0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	+0.6	-3.7	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	+0.8	-2.3	-0.6	+1.0