Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27180 and PS417_27185 are separated by 273 nucleotidesPS417_27185 and PS417_27190 are separated by 370 nucleotidesPS417_27190 and PS417_27195 are separated by 117 nucleotidesPS417_27195 and PS417_27200 are separated by 135 nucleotides PS417_27180: PS417_27180 - peroxidase, at 5,867,303 to 5,867,941 _27180 PS417_27185: PS417_27185 - porin, at 5,868,215 to 5,869,579 _27185 PS417_27190: PS417_27190 - taurine ABC transporter substrate-binding protein, at 5,869,950 to 5,870,936 _27190 PS417_27195: PS417_27195 - N-acetylglutamate synthase, at 5,871,054 to 5,872,355 _27195 PS417_27200: PS417_27200 - acetylornithine deacetylase, at 5,872,491 to 5,873,639 _27200
Group Condition PS417_27180 PS417_27185 PS417_27190 PS417_27195 PS417_27200
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.4 -2.4 -0.0 -3.8 -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -1.9 +0.2 -3.7 -0.2
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x -0.7 -0.3 +0.1 -3.9 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -0.7 +0.3 -3.8 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.8 -0.1 -3.6 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 -0.1 -0.1 -3.8 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.9 +0.0 -3.8 -0.4
carbon source octanoate (C) +0.4 -0.6 -0.3 -4.0 -0.3
carbon source L-Alanine (C) -0.5 -0.4 +0.1 -4.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 -1.8 +0.2 -3.7 -0.1
carbon source L-Glutamine (C) -0.3 -0.0 +0.3 -4.4 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.5 +0.3 -3.7 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.9 +0.4 -3.7 +0.1
solid stress Fraxetin 3 mM; solid stress +0.4 -1.0 +0.0 -3.8 -0.1
soil soil sample 7; outgrowth in LB -1.8 -0.3 +0.5 -3.1 +0.3
exudates RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x +0.5 -0.3 +0.2 -3.7 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -1.0 +0.6 -3.7 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.5 +0.3 -3.8 +0.5
carbon source NAG (C) +0.7 -0.1 -0.1 -4.2 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 -0.5 +0.3 -3.7 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 -0.4 +0.3 -3.8 -0.5
carbon source L-Valine (C) +0.1 +0.6 +0.4 -4.0 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.7 -0.6 +0.5 -3.7 -0.1
carbon source L-Valine (C) +0.7 +0.5 -0.4 -3.8 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -0.8 +0.4 -3.7 +0.1
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x +1.0 -0.1 +0.1 -3.6 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.3 -0.7 +0.2 -3.7 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +1.2 -0.3 +0.1 -3.6 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.4 -0.0 +0.2 -3.7 +0.1
carbon source Carbon source D-Mannitol 5 mM +0.7 +0.5 +0.3 -3.3 +0.3
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