Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27150	PS417_27155	PS417_27160	PS417_27165	PS417_27170
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	-3.8	+0.2	-0.0	+0.4
nitrogen source	Inosine (N)	N.D.	-0.8	-0.7	-0.8	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.1	-0.2	-0.3	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.0	-0.5	+0.0	-0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-2.2	+0.2	+0.2	-0.5
phage	P. simiae Grant Run MOI 0.1	N.D.	-1.8	-0.3	-0.3	+0.1
carbon source	Carbon source D-Mannitol 2.5 mM	N.D.	-1.8	+0.1	-0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.4	-0.9	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-2.0	-0.2	+0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.7	-0.4	+0.1	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.4	+0.3	+0.3	+0.1
soil	soil sample 7; outgrowth in LB	N.D.	+0.6	-0.9	+0.1	-0.5
phage	P. simiae OR Antrim MOI 10	N.D.	-0.7	-0.1	+0.8	-0.6
soil	soil sample 8; outgrowth in LB	N.D.	-1.2	+0.6	+0.3	-0.2
phage	JP1 MOI 10	N.D.	+0.9	-0.2	-0.4	-0.7
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.2	+0.4	-0.3	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-1.7	+0.4	+0.8	+0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-1.3	+0.1	+1.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.0	-0.0	-0.5	-0.6
phage	P. simiae ORA MOI 0.1	N.D.	-0.2	-0.5	+1.1	-0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.4	-0.1	+1.2	-0.6
carbon source	D-Glucosamine Hydrochloride (C)	N.D.	-0.6	-0.3	+0.1	+1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	+0.3	+1.0	-0.8
root	root sample 6; outgrowth in LB	N.D.	-0.6	+0.5	+1.2	+0.2
carbon source	D-Glucosamine Hydrochloride (C)	N.D.	-0.3	+0.1	-0.0	+1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.8	-0.4	+0.1	+0.9
phage	P. simiae ORA MOI 10	N.D.	+0.6	+0.9	+0.4	-0.4
stress	methylglyoxal 0.032 vol%	N.D.	+1.6	-0.6	+0.4	+0.1
phage	JP1 MOI 0.1	N.D.	+2.0	+0.2	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.4	+0.7	+0.0	+1.1