Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27125	PS417_27130	PS417_27135	PS417_27140	PS417_27145
carbon source	Putrescine (C)	-4.1	-3.8	-4.7	-6.1	-0.5
carbon source	Putrescine (C)	-4.1	-4.0	-3.3	-4.9	-0.3
nitrogen source	Putrescine (N)	-3.5	-2.7	-2.2	-4.8	+0.1
soil	soil sample 5; outgrowth in LB	-0.8	-0.1	-3.5	-1.3	-0.2
liquid stress	Fraxetin 3 mM; liquid stress	-0.9	-0.1	-3.9	-0.7	+0.1
carbon source	Carbon source L-Citrulline 5 mM	-0.1	-0.1	-4.1	-0.7	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.3	-4.4	-0.3	+0.1
solid stress	Fraxetin 3 mM; solid stress	-1.2	-0.1	-4.1	+0.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.1	-4.1	-0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.4	-0.0	-4.5	+0.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	-0.1	-4.5	-0.2	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.2	-2.0	-2.0	+0.3
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-0.2	-4.1	+0.5	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	-4.5	-0.5	+0.2
liquid stress	Scopoletin 3 mM; liquid stress	-0.2	-0.2	-3.8	-0.2	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	-0.8	-2.4	-0.0	+0.0
liquid stress	Fraxetin 2 mM; liquid stress	-0.4	-0.1	-3.7	-0.2	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+1.1	+0.3	-3.6	-1.8	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.0	-4.6	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.0	-4.5	+0.5	+0.0
liquid stress	Scopoletin 3 mM; liquid stress	-0.3	-0.1	-3.2	-0.3	+0.0
liquid stress	80% Methanol 3 mM; liquid stress	-0.4	-0.1	-3.4	-0.0	+0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.1	-4.2	+1.0	-0.2
seeds	Growth on radish seeds for 72 hours	-1.0	-0.2	-2.7	+0.0	+0.2
phage	P. simiae ORA MOI 10	+0.0	+0.0	-3.7	+0.3	-0.0
carbon source	L-Isoleucine (C)	-0.2	-0.1	-3.3	+0.4	-0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.0	+0.4	-2.6	+0.3	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.2	-3.3	-0.2	+0.4
solid stress	Fraxetin 3 mM; solid stress	-1.7	-0.2	+0.9	+1.2	+0.0
stress	Gentamicin 0.008 mg/ml	+1.0	+0.5	+3.0	-0.4	+0.1