Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27105	PS417_27110	PS417_27115	PS417_27120	PS417_27125
nitrogen source	Putrescine (N)	-6.6	-6.0	-5.2	-2.1	-3.5
carbon source	Putrescine (C)	-5.1	-4.9	-5.0	-2.8	-4.1
carbon source	Putrescine (C)	-5.2	-4.5	-5.1	-2.5	-4.1
solid stress	Fraxetin 3 mM; solid stress	-1.4	-2.9	-1.2	-0.6	-1.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.9	-1.9	-1.4	-0.4	-1.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.2	-2.2	-1.3	+0.2	-1.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.4	-1.7	-1.1	-0.6	-0.7
solid stress	Fraxetin 3 mM; solid stress	-0.9	-1.3	-0.9	-0.4	-1.1
solid stress	Fraxetin 3 mM; solid stress	-1.2	-1.0	-0.7	-0.4	-1.2
carbon source	L-Arabinose (C)	-1.4	-0.9	-1.0	-0.3	-0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.0	-1.0	-1.0	-0.3	-1.1
stress	Cisplatin 0.01 mg/ml	-1.5	-1.0	-1.2	-0.6	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.3	-1.7	-1.2	-0.1	-0.8
carbon source	L-Arabinose (C)	-1.5	-0.7	-1.0	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.7	-1.1	-1.2	-0.1	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.8	-1.4	-0.8	-0.4	-0.4
soil	soil sample 3; outgrowth in LB	-0.7	-1.2	-0.9	-0.1	-0.6
soil	soil sample 5; outgrowth in LB	-1.2	-0.4	-1.1	-0.1	-0.8
liquid stress	Fraxetin 3 mM; liquid stress	-1.1	-0.3	-0.7	-0.5	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.9	-0.5	-0.6	-0.4	-0.7
carbon source	Xylitol (C)	-1.1	-0.6	-0.6	-0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	-1.1	-0.7	-0.2	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.8	-1.0	-0.6	-0.1	-0.6
carbon source	Xylitol (C)	-0.9	-0.8	-0.5	-0.2	-0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.9	-0.1	-0.8	-0.5	-0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-1.2	-0.6	+0.0	-0.6
nophagecontrol	Only library	-0.9	-1.1	-0.5	-0.3	+0.1
phage	P. simiae OR Antrim MOI 1	-1.1	-1.2	-0.3	-0.1	+0.4
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+1.1	+1.0	+1.2	+0.9	+1.1
stress	Gentamicin 0.008 mg/ml	+2.3	+2.1	+2.5	+1.3	+1.0