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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5291 and GFF5292 are separated by 6 nucleotides
GFF5292 and GFF5293 are separated by 23 nucleotides
GFF5293 and GFF5294 are separated by 6 nucleotides
GFF5294 and GFF5295 are separated by 179 nucleotides
GFF5291 - Ferrichrome-iron receptor, at 162,118 to 164,268
GFF5291
GFF5292 - no description, at 164,275 to 164,778
GFF5292
GFF5293 - N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87), at 164,802 to 166,052
GFF5293
GFF5294 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 166,059 to 167,648
GFF5294
GFF5295 - Ferrichrome-iron receptor, at 167,828 to 169,948
GFF5295
Group
Condition
GFF5291
GFF5292
GFF5293
GFF5294
GFF5295
complex community
Community=Locust bean gum; Passage=4
+0.2
-1.4
-0.8
-0.2
+0.0
phage
phage_bap4
-0.1
-0.2
-0.3
-0.1
+0.0
complex community
Community=Locust bean gum; Passage=4
+0.3
-1.4
+0.2
-0.1
+0.3
complex community
Community=Kojac gum; Passage=1
+0.1
-0.4
-0.5
+0.1
+0.1
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.0
-1.2
-0.1
+0.3
no phage control
no phage control
+0.1
+0.2
-0.5
-0.1
+0.0
complex community
Community=Kojac gum; Passage=4
+0.1
-0.4
+0.1
+0.1
+0.1
phage
phage_bap4
+0.1
-0.2
+0.3
-0.1
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.0
-0.6
+0.2
+0.2
complex community
Community=Locust bean gum; Passage=1
+0.2
-0.3
+0.1
-0.2
+0.1
phage
phage_bap4
-0.1
+0.5
-0.2
-0.0
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.2
-0.2
+0.3
-0.0
-0.1
complex community
Community=arabino-guar; Passage=4
+0.3
+0.6
-1.0
+0.2
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.1
+0.2
-0.4
+0.1
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.2
-0.2
+0.2
+0.1
complex community
Community=guar; Passage=4
+0.2
-0.3
+0.5
-0.0
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
-0.1
+0.6
+0.0
+0.1
complex community
Community=arabino-guar; Passage=4
+0.1
+0.1
+0.1
-0.1
+0.5
no phage control
no phage control
+0.0
+0.2
+0.4
+0.1
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.4
-0.1
+0.1
+0.2
complex community
Community=guar; Passage=4
+0.3
-0.3
+0.7
+0.2
-0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.4
+0.2
+0.2
-0.0
vitamin
M9 with Supernatant from Cyptococcus
-0.0
+0.3
+0.5
-0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.2
+0.1
+0.3
+0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.3
+0.1
+0.3
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.6
+0.1
-0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.2
+0.5
+0.4
+0.1
+0.1
complex community
Community=guar; Passage=4
-0.0
+0.2
+0.7
+0.3
+0.1
complex community
Community=arabino-guar; Passage=4
+0.1
+0.4
+0.5
+0.2
+0.2
complex community
Community=arabino-guar; Passage=4
+0.3
+0.2
+0.5
+0.1
+0.4
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