Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_27075	PS417_27080	PS417_27085	PS417_27090	PS417_27095
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.0	+0.1	-0.2	-0.1	-0.3
soil	soil sample 8; outgrowth in LB	+0.4	-0.3	-2.8	-0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.3	+0.3	-1.7	-0.1	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.2	+0.0	-0.1	-0.2	-0.4
seeds	Growth on radish seeds for 72 hours	-0.4	+0.1	-1.3	-0.2	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.7	+0.0	-0.4	-0.1	-0.0
soil	soil sample 3; outgrowth in LB	-0.6	-0.0	-1.6	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	+0.3	-1.2	+0.1	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.3	-0.0	-0.6	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.9	+0.1	-0.1	+0.3	-0.2
liquid stress	80% Methanol 3 mM; liquid stress	-1.7	+0.1	-0.2	-0.1	+0.1
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1	-1.7	-0.1	+0.1	+0.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.6	+0.2	-1.2	-0.0	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.2	+0.1	+0.3	-0.0	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	+0.1	-0.8	+0.0	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.2	+0.4	-0.7	+0.1	-0.1
phage	P. simiae OR Antrim MOI 0.1	+0.7	-0.0	-1.0	-0.3	-0.5
soil	soil sample 7; outgrowth in LB	+0.2	-0.4	-1.2	+0.0	+0.2
ecofab	LB in EcoFAB_3.5mL	-1.1	+0.1	+0.6	-0.1	-0.4
soil	soil sample 6; outgrowth in LB	+0.7	-0.6	-0.9	+0.2	-0.0
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	+0.6	+0.1	-0.9	+0.3	-0.3
seeds	Growth on radish seeds for 72 hours	-0.7	+0.2	+1.1	+0.0	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.3	-0.1	-0.8	+0.1	+0.2
stress	R2A with Fusaric 120 ug/mL	+1.3	-0.4	-0.4	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.2	+0.3	-0.2	-0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+2.3	-0.0	-0.4	-0.2	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.6	-0.1	-0.2	-0.3	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	-0.0	+0.8	+0.1	-0.0
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+1.6	-0.1	+0.5	-0.0	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.5	+0.1	+1.2	-0.1	-0.2