Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02685	PS417_02690	PS417_02695	PS417_02700	PS417_02705
nitrogen source	Urea (N)	+0.1	-0.3	-3.9	-3.3	-3.9
nitrogen source	Inosine (N)	+0.2	+0.0	-6.3	-2.5	-2.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	+0.3	-1.4	-0.4	-4.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.5	-2.1	-1.1	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.3	+0.7	-1.9	-1.9
stress	R2A with Fusaric 120 ug/mL	+0.0	-3.8	-0.2	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.1	-0.4	-1.5	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	-0.4	-0.2	-0.3	-2.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.1	-0.9	-0.7	-0.8	-0.6
stress	R2A with Fusaric 120 ug/mL	+0.1	-2.8	-0.3	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.8	-1.4	+0.1	-0.8
nophagecontrol	Only library	+0.1	-0.4	-2.0	+0.2	-0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.3	+0.1	-1.3	-0.9	-0.9
stress	R2A with Fusaric 120 ug/mL	+0.2	-2.1	-0.6	+0.0	+0.0
phage	P. simiae OR Antrim MOI 1	+0.2	+0.0	-1.4	+0.3	-1.1
stress	R2A with Fusaric 120 ug/mL	-0.0	-2.4	+0.1	+0.2	+0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.5	+0.5	-0.5	-1.4
stress	R2A with Fusaric 120 ug/mL	-0.0	-2.0	+0.3	+0.0	+0.5
stress	R2A with Fusaric 120 ug/mL	+0.0	-2.0	+0.1	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-1.1	+1.5	-0.7	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.2	-1.2	+0.8	-0.3
carbon source	Carbon source L-Citrulline 5 mM	+0.1	-1.3	+0.3	-0.2	+0.9
seeds	Growth on radish seeds for 72 hours	-0.1	-0.8	+1.5	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.7	-0.1	+1.5	-0.6
stress	Phosphomycin 0.003 mg/ml	-0.0	+2.4	-1.2	-0.0	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+0.6	+0.5	+0.5	-0.7
stress	Phosphomycin 0.001 mg/ml	+0.0	+1.9	-0.6	+0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	-0.4	+1.8	+0.9	-1.0
stress	Phosphomycin 0.002 mg/ml	+0.0	+2.5	-0.9	+0.1	-0.2
carbon source	L-Glutamine (C)	-0.0	+2.1	+0.3	-0.3	-0.1