Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27025 and PS417_27030 are separated by 243 nucleotidesPS417_27030 and PS417_27035 are separated by 21 nucleotidesPS417_27035 and PS417_27040 are separated by 205 nucleotidesPS417_27040 and PS417_27045 are separated by 63 nucleotides PS417_27025: PS417_27025 - DNA-binding protein, at 5,835,833 to 5,836,759 _27025 PS417_27030: PS417_27030 - hypothetical protein, at 5,837,003 to 5,837,668 _27030 PS417_27035: PS417_27035 - FAD-linked oxidase, at 5,837,690 to 5,839,084 _27035 PS417_27040: PS417_27040 - 3-phosphoglycerate dehydrogenase, at 5,839,290 to 5,840,519 _27040 PS417_27045: PS417_27045 - ATPase, at 5,840,583 to 5,841,023 _27045
Group Condition PS417_27025 PS417_27030 PS417_27035 PS417_27040 PS417_27045
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.8 N.D. -1.6 -6.5 -0.7
carbon source L-Valine (C) +0.3 N.D. -2.8 -6.4 -0.2
carbon source L-Valine (C) -0.5 N.D. -1.4 -5.1 -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 N.D. -1.4 -6.6 +0.1
nitrogen source Adenine (N) -0.1 N.D. -1.3 -6.5 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -2.0 -6.5 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. -2.4 -6.4 +0.5
carbon source octanoate (C) +0.1 N.D. -2.7 -5.4 -0.2
carbon source D-Sorbitol (C) -0.0 N.D. -1.3 -6.5 -0.3
soil soil sample 7; outgrowth in LB -0.9 N.D. -1.1 -5.9 -0.2
carbon source L-Leucine (C) -0.2 N.D. -1.9 -6.1 +0.1
carbon source D-Trehalose (C) +0.2 N.D. -1.2 -6.7 -0.3
carbon source Xylitol (C) -0.2 N.D. -1.7 -6.1 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 N.D. -1.7 -6.3 +0.5
nitrogen source Ammonium chloride (N) +0.1 N.D. -1.2 -6.6 -0.1
carbon source NAG (C) -0.2 N.D. -1.6 -6.1 +0.1
soil soil sample 5; outgrowth in LB -0.7 N.D. -1.9 -5.5 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. -0.7 -6.5 -0.7
carbon source Inosine (C) +0.1 N.D. -1.7 -6.2 +0.2
carbon source 2-Deoxy-D-Ribose (C) -0.1 N.D. -1.0 -6.7 +0.2
carbon source Xylitol (C) +0.0 N.D. -1.1 -6.6 +0.1
carbon source D-Ribose (C) -0.1 N.D. -0.8 -6.8 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 N.D. -1.2 -6.3 +0.6
carbon source Cytidine (C) -0.2 N.D. -1.0 -6.2 +0.4
carbon source L-Leucine (C) +0.1 N.D. -1.8 -5.7 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 N.D. -0.4 -6.4 +1.0
carbon source D-Glucose (C) +0.1 N.D. -1.1 -6.3 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.2 N.D. +0.1 -6.4 +1.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.7 N.D. +0.7 -6.2 +0.2
carbon source L-Glutamine (C) -0.1 N.D. +1.6 -6.3 -0.2
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PS417_27025
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PS417_27030
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PS417_27040
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PS417_27045
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