Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27015 and PS417_27020 are separated by 33 nucleotidesPS417_27020 and PS417_27025 are separated by 120 nucleotidesPS417_27025 and PS417_27030 are separated by 243 nucleotidesPS417_27030 and PS417_27035 are separated by 21 nucleotides PS417_27015: PS417_27015 - ribose 5-phosphate isomerase, at 5,834,093 to 5,834,764 _27015 PS417_27020: PS417_27020 - DNA-binding protein, at 5,834,798 to 5,835,712 _27020 PS417_27025: PS417_27025 - DNA-binding protein, at 5,835,833 to 5,836,759 _27025 PS417_27030: PS417_27030 - hypothetical protein, at 5,837,003 to 5,837,668 _27030 PS417_27035: PS417_27035 - FAD-linked oxidase, at 5,837,690 to 5,839,084 _27035
Group Condition PS417_27015 PS417_27020 PS417_27025 PS417_27030 PS417_27035
carbon source octanoate (C) N.D. +0.3 -0.3 N.D. -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 +0.2 N.D. -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -0.8 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -0.2 N.D. -2.0
soil soil sample 5; outgrowth in LB N.D. +0.0 -0.7 N.D. -1.9
carbon source octanoate (C) N.D. +0.0 +0.1 N.D. -2.7
carbon source L-Valine (C) N.D. +0.2 +0.3 N.D. -2.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -0.7 N.D. -1.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.7 -0.2 N.D. -1.2
carbon source L-Leucine (C) N.D. -0.0 -0.2 N.D. -1.9
carbon source NAG (C) N.D. -0.2 -0.2 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -0.3 N.D. -1.7
carbon source NAG (C) N.D. -0.2 -0.2 N.D. -1.6
carbon source Xylitol (C) N.D. -0.0 -0.2 N.D. -1.7
root root sample 6; outgrowth in LB N.D. +0.8 -1.0 N.D. -1.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -0.7 N.D. -1.0
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. -0.3 -0.8 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 -0.1 N.D. -1.6
soil soil sample 7; outgrowth in LB N.D. +0.1 -0.9 N.D. -1.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 -0.7 N.D. -1.0
carbon source Inosine (C) N.D. +0.0 +0.1 N.D. -1.7
carbon source L-Valine (C) N.D. +0.4 -0.5 N.D. -1.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.3 -0.8 N.D. -1.0
carbon source Carbon source D-Mannitol 2.5 mM N.D. +0.2 -0.4 N.D. -1.4
nitrogen source Inosine (N) N.D. +0.1 +0.1 N.D. -1.6
stress R2A with Polymyxin B sulfate 0.002 mg/ml N.D. +0.2 -0.5 N.D. -1.1
carbon source L-Leucine (C) N.D. +0.4 +0.1 N.D. -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 -0.4 N.D. -1.3
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.7 -0.0 N.D. -1.3
phage P. simiae ORA MOI 0.1 N.D. +0.5 -0.5 N.D. +1.0
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PS417_27020
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