Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_27000 and PS417_27005 are separated by 0 nucleotidesPS417_27005 and PS417_27010 are separated by 41 nucleotidesPS417_27010 and PS417_27015 are separated by 137 nucleotidesPS417_27015 and PS417_27020 are separated by 33 nucleotides PS417_27000: PS417_27000 - membrane protein, at 5,831,518 to 5,831,985 _27000 PS417_27005: PS417_27005 - membrane protein, at 5,831,986 to 5,832,399 _27005 PS417_27010: PS417_27010 - threonine dehydratase, at 5,832,441 to 5,833,955 _27010 PS417_27015: PS417_27015 - ribose 5-phosphate isomerase, at 5,834,093 to 5,834,764 _27015 PS417_27020: PS417_27020 - DNA-binding protein, at 5,834,798 to 5,835,712 _27020
Group Condition PS417_27000 PS417_27005 PS417_27010 PS417_27015 PS417_27020
carbon source L-Valine (C) -0.3 -2.5 -2.7 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.0 -4.0 N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.1 -1.2 -2.0 N.D. -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.7 +0.6 -4.6 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -2.8 -2.0 N.D. -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -1.4 -3.2 N.D. +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.4 -3.4 N.D. -0.3
carbon source L-Valine (C) -0.4 -1.2 -2.6 N.D. +0.2
carbon source octanoate (C) -0.4 -0.4 -3.0 N.D. +0.0
nitrogen source Cytidine (N) -0.0 -0.8 -2.8 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -0.4 -3.0 N.D. +0.2
carbon source octanoate (C) -0.0 -0.5 -3.4 N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -2.5 -1.5 N.D. +0.4
nitrogen source Inosine (N) -0.1 -0.1 -3.4 N.D. +0.1
carbon source Gly-Glu (C) +0.3 -0.2 -3.1 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.6 -2.3 N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.6 -2.7 N.D. -0.0
carbon source Gly-Glu (C) -0.2 +0.2 -2.5 N.D. -0.5
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -1.7 -1.3 N.D. -0.2
carbon source D-Glucose-6-Phosphate (C) -0.4 +0.3 -2.6 N.D. -0.0
soil soil sample 7; outgrowth in LB +0.3 -2.6 -0.3 N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 +0.7 -2.5 N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +1.0 -2.8 N.D. -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.6 -2.9 N.D. +0.1
nitrogen source Putrescine (N) -0.1 +0.8 -2.3 N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +1.1 -2.1 N.D. -0.1
root root sample 6; outgrowth in LB +1.6 -1.3 -1.0 N.D. +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.7 +1.3 -1.5 N.D. -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 +1.3 -1.3 N.D. -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 +1.7 -2.0 N.D. +0.1
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