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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5271 and GFF5272 are separated by 179 nucleotides
GFF5272 and GFF5273 are separated by 139 nucleotides
GFF5273 and GFF5274 are separated by 13 nucleotides
GFF5274 and GFF5275 are separated by 17 nucleotides
GFF5271 - Transcriptional regulator, LysR family, at 139,065 to 139,994
GFF5271
GFF5272 - Various polyols ABC transporter, substrate-binding protein, at 140,174 to 141,484
GFF5272
GFF5273 - Various polyols ABC transporter, permease protein 1, at 141,624 to 142,481
GFF5273
GFF5274 - Various polyols ABC transporter, permease protein 2, at 142,495 to 143,331
GFF5274
GFF5275 - Various polyols ABC transporter, ATP-binding protein, at 143,349 to 144,389
GFF5275
Group
Condition
GFF5271
GFF5272
GFF5273
GFF5274
GFF5275
complex community
Community=arabino-guar; Passage=4
+0.1
-1.3
-0.3
-0.3
-0.4
complex community
Community=arabino-guar; Passage=4
-0.1
+0.0
-0.2
-1.4
-0.1
complex community
Community=guar; Passage=4
-0.2
-0.1
-0.2
-0.2
-0.2
complex community
Community=Locust bean gum; Passage=4
-0.1
+0.2
-0.7
-0.2
+0.1
complex community
Community=guar; Passage=4
+0.4
-0.0
-0.2
-0.2
-0.3
complex community
Community=Kojac gum; Passage=4
-0.2
-0.1
-0.2
-0.1
+0.4
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.4
+0.6
-1.1
+0.0
complex community
Community=Locust bean gum; Passage=4
-0.4
-0.2
+0.4
+0.1
-0.0
complex community
Community=arabino-guar; Passage=4
+0.9
-0.8
+0.1
+0.2
-0.3
complex community
Community=guar; Passage=4
+0.4
+0.0
-0.0
+0.2
-0.4
phage
phage_bap4
-0.1
-0.1
+0.0
-0.1
+0.5
complex community
Community=Locust bean gum; Passage=4
+0.4
+0.0
+0.4
-0.7
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.2
+0.3
+0.2
-0.3
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.1
-0.3
+0.1
+0.5
+0.0
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.3
-0.2
+0.0
-0.1
+0.4
complex community
Community=arabino-guar; Passage=4
+0.1
-0.2
+0.1
-0.1
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.2
+0.1
+0.4
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
-0.1
+0.2
+0.6
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
-0.1
+0.1
+0.3
+0.2
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.2
-0.1
+0.1
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
-0.2
+0.3
+0.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.1
+0.2
+0.4
+0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.3
-0.2
+0.1
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.2
+0.2
+0.2
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.2
+0.0
+0.2
+0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
-0.0
+0.2
+0.3
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
+0.1
+0.3
+0.5
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
-0.1
+0.1
+0.4
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
-0.0
+0.2
+0.5
+0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.4
+0.0
+0.3
+0.5
-0.1
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