Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26945 and PS417_26950 are separated by 240 nucleotidesPS417_26950 and PS417_26955 are separated by 16 nucleotidesPS417_26955 and PS417_26960 are separated by 85 nucleotidesPS417_26960 and PS417_26965 are separated by 144 nucleotides PS417_26945: PS417_26945 - sulfate ABC transporter ATP-binding protein, at 5,819,192 to 5,820,256 _26945 PS417_26950: PS417_26950 - LysR family transcriptional regulator, at 5,820,497 to 5,821,360 _26950 PS417_26955: PS417_26955 - ATPase P, at 5,821,377 to 5,823,623 _26955 PS417_26960: PS417_26960 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 5,823,709 to 5,824,149 _26960 PS417_26965: PS417_26965 - thymidylate synthase, at 5,824,294 to 5,825,127 _26965
Group Condition PS417_26945 PS417_26950 PS417_26955 PS417_26960 PS417_26965
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 -0.4 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.6 -0.3 N.D. N.D. N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -0.3 N.D. N.D. N.D.
nitrogen source Urea (N) -0.6 -0.2 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.5 -0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days -0.8 +0.5 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.6 +0.3 N.D. N.D. N.D.
stress Doxycycline hyclate 0.001 mg/ml +0.3 -0.5 N.D. N.D. N.D.
liquid stress Scopoletin 3 mM; liquid stress -0.5 +0.3 N.D. N.D. N.D.
phage P. simiae OR Antrim MOI 10 +0.4 -0.4 N.D. N.D. N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.4 +0.5 N.D. N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) -0.5 +0.6 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 +0.5 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 -0.2 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +0.3 N.D. N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x +0.4 +0.4 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.6 +0.3 N.D. N.D. N.D.
carbon source L-Valine (C) +0.1 +0.7 N.D. N.D. N.D.
root root sample 6; outgrowth in LB +0.1 +0.8 N.D. N.D. N.D.
phage Wcs_0.1 +0.3 +0.7 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.4 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.1 -0.0 N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.6 +0.6 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 +0.3 N.D. N.D. N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.0 +0.2 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.1 +1.1 N.D. N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +1.0 +0.3 N.D. N.D. N.D.
soil soil sample 4; outgrowth in LB +0.9 +0.5 N.D. N.D. N.D.
seeds Growth on radish seeds for 72 hours +0.8 +0.8 N.D. N.D. N.D.
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