Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26915	PS417_26920	PS417_26925	PS417_26930	PS417_26935
motility	outer cut, LB soft agar motility assay	-0.9	-0.3	-0.1	-0.3	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.6	-0.1	+0.2	-1.0	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	-0.1	-0.5	+0.2	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.5	-0.2	-0.7	-0.2	-0.3
seeds	Growth on radish seeds for 72 hours	-0.9	+0.1	+0.2	+0.3	-0.3
carbon source	L-Valine (C)	-0.6	+0.0	-0.4	-0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.3	-0.2	-0.2	+0.6
phage	JP1 MOI 10	-0.7	-0.1	-0.2	+0.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.4	-0.4	+0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	+0.2	-0.6	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.2	+0.5	+0.4	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	+0.3	+0.3	+0.1	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.2	+0.1	+0.7	-0.5	+0.2
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.5	+0.2	-0.4	-0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	+1.1	-0.2	+0.3	-0.4	-0.4
phage	P. simiae ORA MOI 10	-0.4	-0.1	+0.4	+0.1	+0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+1.1	+0.0	-0.1	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.7	-0.0	-0.4	+0.4	-0.2
soil	soil sample 3; outgrowth in LB	+0.2	+0.1	+0.4	+0.5	-0.6
carbon source	D-Glucosamine Hydrochloride (C)	-0.3	-0.1	+0.1	+0.7	+0.3
soil	soil sample 8; outgrowth in LB	+0.6	+0.0	+0.5	+0.2	-0.6
phage	P. simiae OR1 MOI 0.1	+0.4	-0.2	+0.2	+0.8	-0.5
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.8	-0.2	+0.2	+0.2	-0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.5	+0.4	-0.0	+0.3	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.4	+0.2	+0.5	-0.5	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.1	+1.1	+0.4	-0.2
root	root sample 6; outgrowth in LB	+0.8	+0.2	+0.0	-0.0	+0.6
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.7	+0.5	+0.2	+0.1	+0.1
soil	soil sample 7; outgrowth in LB	+0.8	-0.3	+0.6	+0.4	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.4	+0.6	+0.5	+0.8	+0.8