Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26865 and PS417_26870 are separated by 133 nucleotidesPS417_26870 and PS417_26875 are separated by 21 nucleotidesPS417_26875 and PS417_26880 are separated by 239 nucleotidesPS417_26880 and PS417_26890 are separated by 1695 nucleotides PS417_26865: PS417_26865 - ferredoxin, at 5,800,727 to 5,800,978 _26865 PS417_26870: PS417_26870 - 5-hydroxymethyluracil DNA glycosylase, at 5,801,112 to 5,801,924 _26870 PS417_26875: PS417_26875 - histidine kinase, at 5,801,946 to 5,802,812 _26875 PS417_26880: PS417_26880 - SAM-dependent methyltransferase, at 5,803,052 to 5,804,248 _26880 PS417_26890: PS417_26890 - dihydroxy-acid dehydratase, at 5,805,944 to 5,807,785 _26890
Group Condition PS417_26865 PS417_26870 PS417_26875 PS417_26880 PS417_26890
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 +1.0 -0.4 -5.9
carbon source NAG (C) N.D. -0.2 -0.0 -0.3 -5.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -0.0 -0.0 -0.5 -4.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.3 -0.5 -0.4 -3.4
soil soil sample 2; outgrowth in LB N.D. -0.3 +0.1 -0.3 -3.9
nitrogen source Inosine (N) N.D. +0.0 +0.1 -0.6 -3.9
carbon source L-Valine (C) N.D. +0.4 -0.2 -0.1 -4.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 +1.3 -0.3 -5.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 +0.3 +0.1 -4.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 +1.0 -0.4 -4.3
carbon source D-Gluconic Acid (C) N.D. +0.2 +0.1 -0.2 -4.1
carbon source Gly-Glu (C) N.D. +0.3 +0.2 +0.1 -4.5
carbon source D-Galacturonic Acid (C) N.D. +0.2 +0.1 -0.3 -4.0
carbon source L-Asparagine (C) N.D. +0.2 +0.3 +0.0 -4.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 +1.0 -0.2 -4.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 +1.6 +0.1 -5.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 +0.5 -0.2 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 +0.7 -0.5 -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 +1.1 -0.0 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 +1.2 +0.3 -4.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 +0.8 -0.1 -3.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 +1.0 -0.0 -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 +0.8 -0.4 -3.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 +0.4 -0.7 -3.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.2 +1.3 -0.8 -3.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 +0.9 -0.2 -3.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 +1.1 +0.1 -4.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.0 +1.0 -0.4 -3.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 +1.1 +0.1 -3.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 +1.5 -0.5 -2.7
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