Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26845	PS417_26850	PS417_26855	PS417_26860	PS417_26865
liquid stress	Scopoletin 3 mM; liquid stress	-0.0	-4.1	-0.1	N.D.	N.D.
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	-3.8	-0.2	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-4.1	+0.1	N.D.	N.D.
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.2	-3.7	-0.0	N.D.	N.D.
supernatant control	Vogels_fungal_media; pH 5.5	-0.0	-3.7	-0.1	N.D.	N.D.
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-3.9	+0.2	N.D.	N.D.
soil	soil sample 5; outgrowth in LB	+0.1	-3.6	-0.1	N.D.	N.D.
ecofab	LB in EcoFAB_3.5mL	-0.0	-2.4	-0.1	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.0	-2.6	+0.2	N.D.	N.D.
liquid stress	Fraxetin 2 mM; liquid stress	+0.1	-2.1	-0.1	N.D.	N.D.
phage	P. simiae OR Antrim MOI 0.1	+0.1	-2.5	+0.2	N.D.	N.D.
carbon source	2-Deoxy-D-Ribose 10 mM (C)	-0.1	-1.8	-0.2	N.D.	N.D.
carbon source	2-Deoxy-D-Ribose (C)	+0.0	-2.0	-0.0	N.D.	N.D.
phage	P. simiae OR Antrim MOI 1	+0.2	-1.9	-0.2	N.D.	N.D.
phage moi 100	Time6-phageFRS	+0.2	-2.0	+0.1	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	-1.9	+0.0	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.2	-1.9	+0.0	N.D.	N.D.
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.1	-1.6	+0.2	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.0	-1.7	+0.2	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.5	-2.1	+0.1	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-1.5	+0.4	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.4	-1.8	+0.3	N.D.	N.D.
phage	Wcs_0.1	+0.3	-1.6	+0.2	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+1.8	-0.3	N.D.	N.D.
soil	soil sample 2; outgrowth in LB	+0.2	+1.5	-0.2	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+1.3	+0.4	N.D.	N.D.
stress	Cisplatin 0.01 mg/ml	-0.1	+1.7	-0.1	N.D.	N.D.
phage	JP1 MOI 0.1	+0.3	+1.7	+0.1	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-0.0	+4.4	+0.0	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+5.8	-0.1	N.D.	N.D.