Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26830	PS417_26835	PS417_26840	PS417_26845	PS417_26850
liquid stress	Scopoletin 3 mM; liquid stress	+0.1	-0.1	-0.2	-0.0	-4.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+0.1	-0.6	+0.1	-3.9
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.0	+0.5	-0.8	-0.0	-3.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.0	+0.4	-0.2	+0.0	-4.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.1	-0.2	+0.4	-0.2	-3.7
supernatant control	Vogels_fungal_media; pH 5.5	+0.1	+0.4	-0.0	-0.0	-3.7
soil	soil sample 5; outgrowth in LB	+0.0	+0.6	+0.2	+0.1	-3.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	+0.2	+0.2	-0.0	-2.6
ecofab	LB in EcoFAB_3.5mL	-0.1	+0.4	-0.2	-0.0	-2.4
phage	P. simiae OR Antrim MOI 0.1	+0.1	-0.2	-0.0	+0.1	-2.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.5	-0.2	-0.1	+0.4	-1.8
phage	Wcs_0.1	+0.2	-0.6	-0.4	+0.3	-1.6
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.4	+0.6	-0.4	-0.3	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.1	-0.0	+0.5	-2.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	-0.4	-0.2	-1.7
phage	P. simiae OR Antrim MOI 1	+0.3	+0.1	-0.4	+0.2	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	-0.5	-0.0	+0.0	-1.7
carbon source	2-Deoxy-D-Ribose (C)	+0.1	+0.5	-0.3	+0.0	-2.0
liquid stress	Fraxetin 2 mM; liquid stress	+0.4	-0.0	+0.4	+0.1	-2.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.0	+0.6	+0.0	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	+0.7	+0.1	+0.2	-1.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.8	-0.4	-0.2	+1.3
supernatant control	Vogels_fungal_media 0.1X	+0.2	+1.2	-0.9	-0.2	-0.2
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.0	+1.8	-0.4	+0.2	-1.4
supernatant control	Vogels_fungal_media 0.1X	+0.2	-0.6	-0.3	-0.0	+1.6
phage	JP1 MOI 0.1	-0.5	-0.8	+0.6	+0.3	+1.7
phage	JP1 MOI 10	-0.1	-0.5	+0.9	+0.3	+0.9
soil	soil sample 7; outgrowth in LB	+0.1	-0.1	+1.1	+0.4	+1.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.0	+0.0	-0.3	-0.0	+4.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	-0.7	-0.3	-0.4	+5.8