Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26810	PS417_26815	PS417_26820	PS417_26825	PS417_26830
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-3.3	+0.1	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.4	-0.5	N.D.	-0.1
stress	methylglyoxal 0.032 vol%	N.D.	-2.3	-0.1	N.D.	-0.5
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	-2.3	-0.7	N.D.	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-2.2	-0.3	N.D.	-0.1
carbon source	Trisodium citrate (C)	N.D.	-1.5	-0.9	N.D.	+0.2
soil	soil sample 6; outgrowth in LB	N.D.	-1.9	-0.2	N.D.	+0.2
motility	outer cut, LB soft agar motility assay	N.D.	-1.4	-0.4	N.D.	-0.1
motility	inner cut, LB soft agar motility assay	N.D.	-1.5	-0.6	N.D.	+0.2
solid stress	Fraxetin 3 mM; solid stress	N.D.	-1.4	-0.6	N.D.	+0.2
carbon source	Trisodium citrate (C)	N.D.	-0.9	-1.0	N.D.	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.6	-0.3	N.D.	+0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	N.D.	-0.7	-0.9	N.D.	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.4	-0.2	N.D.	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-1.7	-0.2	N.D.	+0.2
phage	P. simiae ORA MOI 0.1	N.D.	-1.6	-0.1	N.D.	+0.0
phage	Wcs_1	N.D.	-1.4	-0.1	N.D.	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.5	-0.2	N.D.	+0.1
phage	P. simiae OR Antrim MOI 1	N.D.	-1.2	-0.5	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.6	+0.3	N.D.	+0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.4	-0.0	N.D.	+0.3
phage	P. simiae ORA MOI 10	N.D.	-1.5	+0.3	N.D.	+0.1
liquid stress	Fraxetin 2 mM; liquid stress	N.D.	-1.4	+0.1	N.D.	+0.4
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-1.3	+0.2	N.D.	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.1	+0.4	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+1.0	-0.1	N.D.	-0.6
seeds	Growth on radish seeds for 72 hours	N.D.	+1.6	-0.7	N.D.	+0.0
carbon source	L-Valine (C)	N.D.	+1.2	+0.5	N.D.	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+1.3	+0.5	N.D.	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+4.5	+0.3	N.D.	-0.4