Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_26795	PS417_26800	PS417_26805	PS417_26810	PS417_26815
phage	P. simiae OR1 MOI 0.1	N.D.	-1.0	-4.7	N.D.	+0.6
solid stress	Fraxetin 3 mM; solid stress	N.D.	-1.2	-2.0	N.D.	-1.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.5	-3.4	N.D.	-0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-0.3	-3.4	N.D.	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.3	-0.5	N.D.	-3.3
soil	soil sample 7; outgrowth in LB	N.D.	-0.5	-2.8	N.D.	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-2.2	N.D.	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.7	-1.4	N.D.	-1.3
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-0.5	-1.1	N.D.	-1.3
root	root sample 6; outgrowth in LB	N.D.	-0.1	-3.4	N.D.	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+0.4	N.D.	-2.4
soil	soil sample 3; outgrowth in LB	N.D.	-0.3	-2.3	N.D.	+0.8
nophagecontrol	Only library	N.D.	-0.4	-1.7	N.D.	+0.6
liquid stress	80% Methanol 3 mM; liquid stress	N.D.	-0.8	-1.4	N.D.	+0.8
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	N.D.	+0.2	+1.0	N.D.	-2.3
carbon source	L-Valine (C)	N.D.	-0.5	-1.6	N.D.	+1.2
phage	P. simiae OR Antrim MOI 10	N.D.	-0.7	-1.1	N.D.	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.1	+1.1	N.D.	-1.7
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.1	-1.3	N.D.	+1.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+1.7	N.D.	-1.4
exudates	RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x	N.D.	-0.4	+1.4	N.D.	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+1.9	+0.5	N.D.	-0.5
stress	Neomycin 0.04 mg/ml	N.D.	+1.3	+1.2	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	+1.0	N.D.	+1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	+1.0	+0.8	N.D.	+1.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+2.3	+1.3	N.D.	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+3.0	+2.6	N.D.	-1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-0.0	+1.4	N.D.	+4.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+3.3	+2.8	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+3.5	+3.1	N.D.	+0.7