Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_26780	PS417_26785	PS417_26790	PS417_26795	PS417_26800
solid stress	Fraxetin 3 mM; solid stress	N.D.	-1.2	-0.3	N.D.	-1.2
stress	L-Lysine 60 mM	N.D.	-0.2	-0.2	N.D.	-1.8
stress	Gentamicin 0.008 mg/ml	N.D.	+0.2	-0.9	N.D.	-1.3
phage	P. simiae OR1 MOI 0.1	N.D.	-0.3	-0.4	N.D.	-1.0
phage	P. simiae Grant Run MOI 0.1	N.D.	-0.5	+0.0	N.D.	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.1	-0.2	N.D.	-1.2
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.7	+0.1	N.D.	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-1.3	N.D.	-0.2
liquid stress	80% Methanol 3 mM; liquid stress	N.D.	-0.3	+0.1	N.D.	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	+0.2	-0.3	N.D.	-0.9
seeds	Growth on radish seeds for 72 hours	N.D.	+0.3	-0.3	N.D.	-0.8
phage	P. simiae Grant Run MOI 10	N.D.	+0.3	-0.5	N.D.	-0.6
carbon source	D-Glucosamine Hydrochloride (C)	N.D.	+0.3	-0.2	N.D.	-0.9
phage	JP1 MOI 10	N.D.	+0.7	-0.3	N.D.	-1.0
supernatant control	Vogels_fungal_media 0.1X	N.D.	+0.5	+0.1	N.D.	-0.9
phage	P. simiae ORA MOI 0.1	N.D.	-0.5	-0.3	N.D.	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.7	-0.4	N.D.	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	+0.7	N.D.	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.0	+1.0	N.D.	-0.5
phage	P. simiae OR Antrim MOI 1	N.D.	+1.0	+0.2	N.D.	-0.6
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.0	+0.2	N.D.	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.4	+0.3	N.D.	+0.8
phage	JP1 MOI 1	N.D.	+0.7	+0.9	N.D.	-0.0
stress	Neomycin 0.04 mg/ml	N.D.	+0.2	+0.3	N.D.	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	-0.2	N.D.	+1.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.5	+1.0	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	-0.0	N.D.	+3.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.3	+0.3	N.D.	+2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.0	+0.0	N.D.	+3.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.3	+0.3	N.D.	+3.5