Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_02655 and PS417_02660 are separated by 231 nucleotidesPS417_02660 and PS417_02665 are separated by 2 nucleotidesPS417_02665 and PS417_02670 overlap by 4 nucleotidesPS417_02670 and PS417_02675 overlap by 4 nucleotides PS417_02655: PS417_02655 - amino acid ABC transporter substrate-binding protein, at 607,904 to 609,040 _02655 PS417_02660: PS417_02660 - branched-chain amino acid transporter permease subunit LivH, at 609,272 to 610,186 _02660 PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466 _02665 PS417_02670: PS417_02670 - ABC transporter, at 611,463 to 612,338 _02670 PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051 _02675
Group Condition PS417_02655 PS417_02660 PS417_02665 PS417_02670 PS417_02675
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.5 -3.1 -2.9 -5.0 -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.9 -2.9 -2.9 -1.9 -3.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.5 -2.6 -3.0 -2.0 -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.3 -2.2 -2.9 -1.8 -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.7 -1.0 -3.0 -2.0
carbon source L-Leucine (C) -0.7 -1.0 -0.9 -1.0 -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -1.2 -1.4 -1.3 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.6 -0.8 -1.4 -1.2
carbon source L-Leucine (C) -1.0 -0.9 -0.8 -0.9 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -1.4 -1.0 -1.2 -0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.9 -0.5 -0.6 -1.5
carbon source L-Isoleucine (C) -0.4 -0.5 -0.5 -0.7 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.8 -0.8 -0.1 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 -0.1 -0.1 -0.6 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.3 -0.4 -0.4 -1.1
carbon source m-Inositol (C) -0.3 -0.3 -0.2 -0.4 -0.8
phage JP1 MOI 0.1 +0.2 +0.0 +0.1 -0.9 -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.2 -0.5 -1.5 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.2 -0.2 -1.5 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.5 -0.5 +0.2 -0.7
soil soil sample 5; outgrowth in LB +0.5 +0.1 +0.4 -1.4 -0.5
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 +0.0 -0.1 -1.1 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.5 -0.1 -0.9 +0.3
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -0.2 -0.1 +0.6 +1.2
phage JP1 MOI 10 +0.3 +0.3 -0.2 -0.6 +1.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 +0.2 +0.1 +1.2 +0.5
phage JP1 MOI 1 +0.1 +0.2 -0.1 +1.2 +1.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.4 +0.2 +1.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +0.9 +1.0 +1.2 +0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.1 +1.0 +1.3 +1.3 +1.5
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