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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF5215 and GFF5216 are separated by 97 nucleotides
GFF5216 and GFF5217 are separated by 249 nucleotides
GFF5217 and GFF5218 are separated by 25 nucleotides
GFF5218 and GFF5219 are separated by 2 nucleotides
GFF5215 - Efflux ABC transporter, permease/ATP-binding protein, at 77,432 to 79,234
GFF5215
GFF5216 - Metal dependent phosphohydrolase, at 79,332 to 79,892
GFF5216
GFF5217 - Ferric iron ABC transporter, iron-binding protein, at 80,142 to 81,176
GFF5217
GFF5218 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 81,202 to 82,281
GFF5218
GFF5219 - 2-aminoethylphosphonate ABC transporter permease protein, at 82,284 to 83,999
GFF5219
Group
Condition
GFF5215
GFF5216
GFF5217
GFF5218
GFF5219
complex community
Community=Locust bean gum; Passage=4
-0.1
-0.6
+0.3
-1.1
-0.2
complex community
Community=guar; Passage=4
-0.2
-0.0
+0.6
-2.0
+0.1
complex community
Community=guar; Passage=4
-0.3
-0.3
-0.1
-0.4
-0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.4
-0.2
-0.6
+0.2
complex community
Community=guar; Passage=4
-0.2
-0.5
-0.7
+0.6
-0.4
complex community
Community=Locust bean gum; Passage=4
-0.6
+0.3
-0.3
-0.4
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
-0.2
-0.2
-0.3
-0.1
complex community
Community=Kojac gum; Passage=4
+0.4
+0.6
-0.5
-1.1
-0.2
vitamin
M9 with Supernatant from Cyptococcus
-0.2
-0.2
-0.4
-0.0
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.2
-0.2
-0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.1
-0.2
-0.2
+0.0
complex community
Community=arabino-guar; Passage=4
+0.9
-0.2
+0.4
-2.2
+0.4
vitamin
M9 with Supernatant from Cyptococcus
-0.3
-0.1
-0.4
+0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.0
-0.1
-0.4
+0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.1
-0.1
-0.5
+0.2
complex community
Community=arabino-guar; Passage=4
-0.1
+0.0
-1.3
+1.0
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
-0.4
+0.3
-0.1
+0.0
complex community
Community=Kojac gum; Passage=1
-0.4
-0.2
+0.2
+0.0
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.3
+0.2
+0.8
-0.7
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.2
-0.2
+0.4
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
-0.1
-0.3
+0.3
-0.1
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.0
-0.4
+0.4
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
+0.2
-0.2
-0.2
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
-0.3
+0.2
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
+0.2
-0.1
-0.2
+0.0
phage
phage_bap4
+0.1
-0.0
+0.1
+0.5
+0.2
complex community
Community=guar; Passage=4
+0.5
+0.3
+0.3
-0.2
+0.0
complex community
Community=arabino-guar; Passage=4
+0.5
+0.1
+0.7
-0.4
-0.0
complex community
Community=arabino-guar; Passage=4
-0.0
+0.8
-0.3
+0.0
+0.5
phage
phage_bap4
+0.1
+0.1
+0.4
+0.3
+0.2
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