Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_26690 and PS417_26695 are separated by 81 nucleotidesPS417_26695 and PS417_26700 are separated by 24 nucleotidesPS417_26700 and PS417_26705 overlap by 4 nucleotidesPS417_26705 and PS417_26710 are separated by 149 nucleotides PS417_26690: PS417_26690 - Holliday junction resolvase, at 5,769,788 to 5,770,225 _26690 PS417_26695: PS417_26695 - uracil phosphoribosyltransferase, at 5,770,307 to 5,770,813 _26695 PS417_26700: PS417_26700 - aspartate carbamoyltransferase catalytic subunit, at 5,770,838 to 5,771,842 _26700 PS417_26705: PS417_26705 - dihydroorotase, at 5,771,839 to 5,773,110 _26705 PS417_26710: PS417_26710 - membrane protein, at 5,773,260 to 5,773,688 _26710
Group Condition PS417_26690 PS417_26695 PS417_26700 PS417_26705 PS417_26710
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.5 N.D. N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.2 N.D. N.D. +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.2 N.D. N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.1 N.D. N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.1 N.D. N.D. +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.1 N.D. N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.5 N.D. N.D. -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.0 N.D. N.D. +0.3
nitrogen source Ammonium chloride (N) N.D. -2.6 N.D. N.D. -0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -2.6 N.D. N.D. -0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -3.0 N.D. N.D. +0.4
phage P. simiae OR1 MOI 0.1 N.D. -2.7 N.D. N.D. +0.2
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x N.D. -2.8 N.D. N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days N.D. -2.2 N.D. N.D. -0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.2 N.D. N.D. -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x N.D. -2.3 N.D. N.D. +0.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.1 N.D. N.D. -0.1
carbon source D-Glucose (C) N.D. -2.2 N.D. N.D. -0.0
supernatant control Vogels_fungal_media; pH 5.5 N.D. -2.1 N.D. N.D. -0.0
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days N.D. -2.2 N.D. N.D. +0.2
carbon source L-Lactate (C) N.D. -2.0 N.D. N.D. -0.1
nitrogen source Inosine (N) N.D. -1.9 N.D. N.D. -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.1 N.D. N.D. +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. -2.0 N.D. N.D. +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -2.1 N.D. N.D. +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -2.0 N.D. N.D. +0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x N.D. -1.8 N.D. N.D. +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.8 N.D. N.D. -0.3
carbon source Trisodium citrate (C) N.D. +3.7 N.D. N.D. -0.3
carbon source Trisodium citrate (C) N.D. +4.7 N.D. N.D. +0.0
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